Schema for modERN TF Peaks - modERN Optimal Peaks for Transcription Factors

Database: dm6 Primary Table: modERN_pupa_peak Row Count: 92,579 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	65817	`int(10) unsigned`	range
`chromEnd`	66237	`int(10) unsigned`	range
`name`	D1	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	154.667	`float`	range
`pValue`	-1	`float`	range
`qValue`	3.27623	`float`	range
`peak`	210	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	strand	signalValue	pValue	qValue	peak
585	chr2L	65817	66237	D1	.	154.667	-1	3.27623	210
585	chr2L	66579	67003	Pif1A	.	156.719	-1	3.8641	212
585	chr2L	66638	67066	CG15710	.	614.378	-1	4.36968	206
585	chr2L	66667	67103	Snoo	.	180.712	-1	4.27075	218
585	chr2L	66682	67062	CG34367	.	238.718	-1	4.15809	190
585	chr2L	66686	67009	CG14655	.	566.107	-1	4.11411	175
585	chr2L	66712	66921	CG8159	.	693.114	-1	4.20868	102
585	chr2L	66714	67054	CG13204	.	552.884	-1	4.05884	153
585	chr2L	66719	66944	CG17806	.	217.06	-1	4.22791	128
585	chr2L	66723	67105	CG8301	.	282.2	-1	4.36704	194

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modERN TF Peaks (modERN_peaks) Track Description


	Description This track shows the transcription factor binding profiles that were produced by the model organism Encyclopedia of Regulatory Networks (modERN) project. The optimal peaks were obtained from the modERN project web site. The optimal peaks were then partitioned by developmental stages. The evidence tracks for the individual transcription factors are available through the ENCODE Portal. References Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, Jameel N, Kadaba M, Patton J, Terrell R, Corson M, Durham TJ, Park S, Samanta S, Han M, Xu J, Yan KK, Celniker SE, White KP, Ma L, Gerstein M, Reinke V, Waterston RH. The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. 2018 Mar;208(3):937-949.

Description