Schema for modERN TF Peaks - modERN Optimal Peaks for Transcription Factors

Database: dm6 Primary Table: modERN_third_instar_peak Row Count: 166,842 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5668	`int(10) unsigned`	range
`chromEnd`	5884	`int(10) unsigned`	range
`name`	Vsx2	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	215.779	`float`	range
`pValue`	-1	`float`	range
`qValue`	3.14145	`float`	range
`peak`	108	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	strand	signalValue	pValue	qValue	peak
585	chr2L	5668	5884	Vsx2	.	215.779	-1	3.14145	108
585	chr2L	5696	5960	psq	.	170.127	-1	4.31658	132
585	chr2L	10607	11023	mod(mdg4)	.	139.828	-1	1.70694	208
585	chr2L	16391	16911	psq	.	341.651	-1	4.30421	260
585	chr2L	16507	16923	mod(mdg4)	.	386.259	-1	2.46358	208
585	chr2L	16591	17111	psq	.	239.493	-1	4.30421	260
585	chr2L	16750	16956	mod(mdg4)	.	281.012	-1	2.46358	168
585	chr2L	19223	19743	psq	.	200.946	-1	4.30421	260
585	chr2L	19626	19761	mod(mdg4)	.	346.045	-1	2.46358	56
585	chr2L	21522	21926	Myc	.	205.245	-1	3.28443	202

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modERN TF Peaks (modERN_peaks) Track Description


	Description This track shows the transcription factor binding profiles that were produced by the model organism Encyclopedia of Regulatory Networks (modERN) project. The optimal peaks were obtained from the modERN project web site. The optimal peaks were then partitioned by developmental stages. The evidence tracks for the individual transcription factors are available through the ENCODE Portal. References Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, Jameel N, Kadaba M, Patton J, Terrell R, Corson M, Durham TJ, Park S, Samanta S, Han M, Xu J, Yan KK, Celniker SE, White KP, Ma L, Gerstein M, Reinke V, Waterston RH. The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. 2018 Mar;208(3):937-949.

Description