Schema for modERN TF Peaks - modERN Optimal Peaks for Transcription Factors

Database: dm6 Primary Table: modERN_unknown_peak Row Count: 9,585 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5084	`int(10) unsigned`	range
`chromEnd`	6085	`int(10) unsigned`	range
`name`	CG8478	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	321.874	`float`	range
`pValue`	-1	`float`	range
`qValue`	3.32284	`float`	range
`peak`	708	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	strand	signalValue	pValue	qValue	peak
585	chr2L	5084	6085	CG8478	.	321.874	-1	3.32284	708
585	chr2L	13988	14398	pan	.	141.108	-1	3.90944	205
585	chr2L	63564	64408	su(Hw)	.	180.464	-1	3.263	568
585	chr2L	64769	66167	su(Hw)	.	176.23	-1	3.05331	958
585	chr2L	64769	66167	su(Hw)	.	285.673	-1	3.61013	758
585	chr2L	66753	67285	CG8478	.	186.549	-1	3.32284	259
585	chr2L	67346	67756	pan	.	158.192	-1	3.90944	205
585	chr2L	121330	121714	EcR	.	489.655	-1	2.92686	194
585	chr2L	121513	121933	EcR	.	131.222	-1	1.39832	210
585	chr2L	129158	129473	CG8478	.	148.775	-1	3.32284	170

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

modERN TF Peaks (modERN_peaks) Track Description


	Description This track shows the transcription factor binding profiles that were produced by the model organism Encyclopedia of Regulatory Networks (modERN) project. The optimal peaks were obtained from the modERN project web site. The optimal peaks were then partitioned by developmental stages. The evidence tracks for the individual transcription factors are available through the ENCODE Portal. References Kudron MM, Victorsen A, Gevirtzman L, Hillier LW, Fisher WW, Vafeados D, Kirkey M, Hammonds AS, Gersch J, Ammouri H, Wall ML, Moran J, Steffen D, Szynkarek M, Seabrook-Sturgis S, Jameel N, Kadaba M, Patton J, Terrell R, Corson M, Durham TJ, Park S, Samanta S, Han M, Xu J, Yan KK, Celniker SE, White KP, Ma L, Gerstein M, Reinke V, Waterston RH. The ModERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors. Genetics. 2018 Mar;208(3):937-949.

Description