Schema for Phantom Peaks (R5) - ChIP-Seq Phantom Peaks (R5)

Database: dm6 Primary Table: phantom_peaks Row Count: 3,088 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	18636	`int(10) unsigned`	range
`chromEnd`	19089	`int(10) unsigned`	range
`name`	phantompeak_1	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	strand
585	chr2L	18636	19089	phantompeak_1	+
585	chr2L	102117	102570	phantompeak_2	+
585	chr2L	107668	108121	phantompeak_3	+
586	chr2L	143050	143503	phantompeak_4	+
586	chr2L	155890	156343	phantompeak_5	+
586	chr2L	158669	159126	phantompeak_6	+
586	chr2L	203515	203968	phantompeak_7	+
586	chr2L	207138	207591	phantompeak_8	+
586	chr2L	250717	251212	phantompeak_9	+
586	chr2L	252169	252622	phantompeak_10	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Phantom Peaks (R5) (phantom_peaks) Track Description


	Description This track shows the locations of phantom peaks in ChIP-Seq experiments. The dataset was obtained from Supplemental Table 3 of the Jain D et al., 2015 manuscript. The results were lifted from the D. melanogaster release 5 assembly to the release 6 assembly. References Jain D, Baldi S, Zabel A, Straub T, Becker PB. Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments. Nucleic Acids Res. 2015 Aug 18;43(14):6959-68.

Description