Schema for Zelda ChIP-Seq - ChIP-Seq of Zelda Transcription Factor

Database: dm6 Primary Table: ZLD_13_macs Row Count: 28,472 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	278	`int(10) unsigned`	range
`chromEnd`	530	`int(10) unsigned`	range
`name`	SRR314830_macs_peak_1	`varchar(255)`	values
`score`	52	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.37852	`float`	range
`pValue`	6.60789	`float`	range
`qValue`	5.25465	`float`	range
`peak`	104	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	278	530	SRR314830_macs_peak_1	52	.	2.37852	6.60789	5.25465	104
585	chr2L	738	973	SRR314830_macs_peak_2	71	.	2.50999	8.51322	7.10368	114
585	chr2L	1669	1826	SRR314830_macs_peak_3	78	.	2.52121	9.29086	7.86463	86
585	chr2L	2212	2370	SRR314830_macs_peak_4	22	.	1.75232	3.45158	2.23365	78
585	chr2L	3029	3182	SRR314830_macs_peak_5	57	.	2.21917	7.16851	5.79903	105
585	chr2L	5566	5973	SRR314830_macs_peak_6	476	.	5.36703	49.6011	47.6748	238
585	chr2L	6643	6852	SRR314830_macs_peak_7	95	.	2.74852	11.0026	9.53764	111
585	chr2L	16620	16863	SRR314830_macs_peak_8	153	.	3.4389	16.8857	15.3072	114
585	chr2L	17796	18123	SRR314830_macs_peak_9	346	.	4.84839	36.4328	34.623	159
585	chr2L	19069	19276	SRR314830_macs_peak_10	205	.	3.6935	22.2372	20.5834	108

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Zelda ChIP-Seq (zelda_chipseq) Track Description


	Description These tracks show the positions that are enriched in the transcription factor Zelda before (mitotic cycles 8-9), during (mitotic cycle 13), and after (mitotic cycle 14) the maternal-to-zygotic transition (MZT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA144105. Credits Harrison MM, Li XY, Kaplan T, Botchan MR, Eisen MB. Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition. PLoS Genet. 2011 Oct;7(10):e1002266. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

Description