Schema for Zelda ChIP-Seq - ChIP-Seq of Zelda Transcription Factor

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Schema for Zelda ChIP-Seq - ChIP-Seq of Zelda Transcription Factor

Database: dm6 Primary Table: ZLD_13_macs_logLR Row Count: 1 Data last updated: 2022-10-20

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/zelda_chipseq...	`varchar(255)`	values

Sample Rows

fileName
/gbdb/dm6/bbi/zelda_chipseq/ZLD_13_macs_logLR.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Zelda ChIP-Seq (zelda_chipseq) Track Description


	Description These tracks show the positions that are enriched in the transcription factor Zelda before (mitotic cycles 8-9), during (mitotic cycle 13), and after (mitotic cycle 14) the maternal-to-zygotic transition (MZT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA144105. Credits Harrison MM, Li XY, Kaplan T, Botchan MR, Eisen MB. Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition. PLoS Genet. 2011 Oct;7(10):e1002266. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.