Schema for Zelda ChIP-Seq - ChIP-Seq of Zelda Transcription Factor

Database: dm6 Primary Table: ZLD_14_macs Row Count: 21,899 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	227	`int(10) unsigned`	range
`chromEnd`	484	`int(10) unsigned`	range
`name`	SRR314831_macs_peak_1	`varchar(255)`	values
`score`	86	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.66756	`float`	range
`pValue`	10.1847	`float`	range
`qValue`	8.62718	`float`	range
`peak`	111	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	227	484	SRR314831_macs_peak_1	86	.	2.66756	10.1847	8.62718	111
585	chr2L	1197	1410	SRR314831_macs_peak_2	135	.	2.99668	15.1639	13.5061	101
585	chr2L	1674	1854	SRR314831_macs_peak_3	74	.	2.38966	8.9873	7.45933	100
585	chr2L	2100	2326	SRR314831_macs_peak_4	62	.	2.24539	7.78503	6.28973	103
585	chr2L	2535	2798	SRR314831_macs_peak_5	68	.	2.29758	8.36664	6.85487	150
585	chr2L	4428	4581	SRR314831_macs_peak_6	48	.	2.03192	6.2722	4.82818	118
585	chr2L	4857	5053	SRR314831_macs_peak_7	79	.	2.35912	9.53489	7.99249	104
585	chr2L	5612	5930	SRR314831_macs_peak_8	279	.	3.98166	29.8194	27.9687	178
585	chr2L	6665	6876	SRR314831_macs_peak_9	74	.	2.49098	8.96429	7.43665	114
585	chr2L	16663	16864	SRR314831_macs_peak_10	65	.	2.4741	8.03333	6.53425	107

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Zelda ChIP-Seq (zelda_chipseq) Track Description


	Description These tracks show the positions that are enriched in the transcription factor Zelda before (mitotic cycles 8-9), during (mitotic cycle 13), and after (mitotic cycle 14) the maternal-to-zygotic transition (MZT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA144105. Credits Harrison MM, Li XY, Kaplan T, Botchan MR, Eisen MB. Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition. PLoS Genet. 2011 Oct;7(10):e1002266. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

Description