Schema for Zelda ChIP-Seq - ChIP-Seq of Zelda Transcription Factor

Database: dm6 Primary Table: ZLD_8_macs Row Count: 20,328 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5749	`int(10) unsigned`	range
`chromEnd`	5925	`int(10) unsigned`	range
`name`	SRR314829_macs_peak_1	`varchar(255)`	values
`score`	75	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	3.82264	`float`	range
`pValue`	9.16905	`float`	range
`qValue`	7.54242	`float`	range
`peak`	94	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	5749	5925	SRR314829_macs_peak_1	75	.	3.82264	9.16905	7.54242	94
585	chr2L	16292	16806	SRR314829_macs_peak_2a	49	.	3.1677	6.47337	4.95451	84
585	chr2L	16292	16806	SRR314829_macs_peak_2b	117	.	4.62263	13.5121	11.7687	396
585	chr2L	19046	19318	SRR314829_macs_peak_3	413	.	8.94654	43.4854	41.3303	139
585	chr2L	19368	19638	SRR314829_macs_peak_4	176	.	5.53666	19.5544	17.6969	141
585	chr2L	26977	27400	SRR314829_macs_peak_5	938	.	9.48186	96.4666	93.8846	197
585	chr2L	28027	28943	SRR314829_macs_peak_6a	829	.	8.87724	85.4703	82.9689	180
585	chr2L	28027	28943	SRR314829_macs_peak_6b	752	.	8.29688	77.7252	75.2829	738
585	chr2L	33713	33970	SRR314829_macs_peak_7	367	.	6.84731	38.8092	36.7005	114
585	chr2L	35664	35865	SRR314829_macs_peak_8	112	.	3.86205	13.018	11.289	99

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Zelda ChIP-Seq (zelda_chipseq) Track Description


	Description These tracks show the positions that are enriched in the transcription factor Zelda before (mitotic cycles 8-9), during (mitotic cycle 13), and after (mitotic cycle 14) the maternal-to-zygotic transition (MZT). The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA144105. Credits Harrison MM, Li XY, Kaplan T, Botchan MR, Eisen MB. Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition. PLoS Genet. 2011 Oct;7(10):e1002266. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

Description