Schema for Polytene TADs (R5) - Polytene TADs Identified by Hi-C (R5)

Database: dm6 Primary Table: GSE72512_polytene_TADs Row Count: 512 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	587	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	300000	`int(10) unsigned`	range
`chromEnd`	390000	`int(10) unsigned`	range
`name`	polytene_TAD_67	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
587	chr2L	300000	390000	polytene_TAD_67
73	chr2L	570000	750000	polytene_TAD_68
9	chr2L	885000	1065000	polytene_TAD_69
74	chr2L	1185000	1680000	polytene_TAD_70
74	chr2L	1755000	1950000	polytene_TAD_71
600	chr2L	1995000	2085000	polytene_TAD_72
602	chr2L	2235000	2340000	polytene_TAD_73
75	chr2L	2385000	2550000	polytene_TAD_74
75	chr2L	2580000	2715000	polytene_TAD_75
76	chr2L	3180000	3330000	polytene_TAD_76

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Polytene TADs (R5) (GSE72512_polytene_TADs) Track Description


	Description This track shows the Topologically Associating Domains (TADs) defined by Hi-C analysis of Drosophila polytene chromosomes. The analysis results were obtained from Supplemental Table S1 in the manuscript by Eagen and colleagues. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly. References Eagen KP, Hartl TA, Kornberg RD. Stable Chromosome Condensation Revealed by Chromosome Conformation Capture. Cell. 2015 Nov 5;163(4):934-46.

Description