Schema for HiCseg Domains (Kc167) (R5) - Domains Predicted by HiCseg Based Hi-C Data for Kc167 Cells (R5)

Database: dm6 Primary Table: GSE85503_Kc_HiCseg Row Count: 1,349 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	50001	`int(10) unsigned`	range
`chromEnd`	80000	`int(10) unsigned`	range
`name`	HiCseg_1	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	chr2L	50001	80000	HiCseg_1
585	chr2L	80001	110000	HiCseg_2
585	chr2L	110001	130000	HiCseg_3
73	chr2L	130001	160000	HiCseg_4
586	chr2L	160001	180000	HiCseg_5
586	chr2L	180001	250000	HiCseg_6
73	chr2L	250001	300000	HiCseg_7
73	chr2L	300001	420000	HiCseg_8
588	chr2L	420001	470000	HiCseg_9
588	chr2L	470001	490000	HiCseg_10

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

HiCseg Domains (Kc167) (R5) (GSE85503_Kc_HiCseg) Track Description


	Description This track shows the domains identified by HiCseg based on Hi-C data for D. melanogaster Kc167 cells. The predictions were obtained from the NCBI GEO database under the accession number GSE85503. The results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly. References El-Sharnouby S, Fischer B, Magbanua JP, Umans B, Flower R, Choo SW, Russell S, White R. Regions of very low H3K27me3 partition the Drosophila genome into topological domains. PLoS One. 2017 Mar 10;12(3):e0172725.

Description