Schema for Kc 5-state (R5) - 5-state Model for Kc cells (R5)

Database: dm6 Primary Table: Kc167_5state Row Count: 8,426

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5300	`int(10) unsigned`	range
`chromEnd`	58754	`int(10) unsigned`	range
`name`	BLACK_0	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`thickStart`	5300	`int(10) unsigned`	range
`thickEnd`	58754	`int(10) unsigned`	range
`itemRgb`	2236962	`int(10) unsigned`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	strand	thickStart	thickEnd	itemRgb
585	chr2L	5300	58754	BLACK_0	+	5300	58754	34,34,34
585	chr2L	58762	65319	BLUE_0	+	58762	65319	0,58,168
585	chr2L	65315	76559	RED_0	+	65315	76559	246,3,48
585	chr2L	76692	84511	BLUE_1	+	76692	84511	0,58,168
585	chr2L	84649	89599	RED_1	+	84649	89599	246,3,48
585	chr2L	89595	94102	BLUE_2	+	89595	94102	0,58,168
585	chr2L	94098	95516	RED_2	+	94098	95516	246,3,48
585	chr2L	95660	96387	YELLOW_0	+	95660	96387	255,199,52
585	chr2L	96489	99976	GREEN_0	+	96489	99976	0,104,23
585	chr2L	100072	104279	YELLOW_1	+	100072	104279	255,199,52

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Kc 5-state (R5) (Kc167_5state) Track Description

Description

This track shows the classification of the genome into 5 discrete domains based on the DamID binding profiles of 53 chromatin proteins in Drosophila Kc167 cells. The characteristics of each of the five states are summarized below:

State	Description	Color
Green	Classic (including pericentric) heterochromatin
Blue	Polycomb Group (PcG) chromatin; subject to epigenetic silencing
Black	Transcriptionally silent (in cell type assayed); probably dynamic
Red	Transcriptionally active euchromatin; genes usually developmentally regulated
Yellow	Transcriptionally active euchromatin; genes usually broadly expressed

Credits

Filion GJ et al. Systematic protein location mapping reveals five principal chromatin types in Drosophila cells. Cell. 2010 Oct 15;143(2):212-24.