Schema for MARs (Embryos) - Matrix Attachment Regions (MARs) in 0-16 Hour Embryos

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Schema for MARs (Embryos) - Matrix Attachment Regions (MARs) in 0-16 Hour Embryos

Database: dm6 Primary Table: MARs_macs_logLR Row Count: 1 Data last updated: 2022-10-20

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/dm6_MARs_macs...	`varchar(255)`	values

Sample Rows

fileName
/gbdb/dm6/bbi/dm6_MARs_macs_logLR.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

MARs (Embryos) (MARs_embryos) Track Description


	Description These tracks show the putative Matrix Attachment Regions (MARs) in D. melanogaster 0-16 hours embryos. The MAR ABI SOLiD reads were mapped against the D. melanogaster genome using CUSHAW3. The MAR peak calls and the log likelihood ratio evidence tracks were produced by MACS. The MAR sequencing reads were obtained from the NCBI Sequence Read Archive (SRA) under the accession number SRP035544. References Pathak RU, Srinivasan A, Mishra RK. Genome-wide mapping of matrix attachment regions in Drosophila melanogaster. BMC Genomics. 2014 Nov 25;15:1022. Liu Y, Popp B, Schmidt B. CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seeding. PLoS One. 2014 Jan 22;9(1):e86869.