Schema for TAD Boundaries (Nuc. Cycle 14) - TAD Boundaries in Nuclear Cycle 14 Embryos

Database: dm6 Primary Table: TAD_nc14_comp Row Count: 2,666 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	17999	`int(10) unsigned`	range
`chromEnd`	18499	`int(10) unsigned`	range
`name`	TAD_comp_1241	`varchar(255)`	values
`score`	146	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	chr2L	17999	18499	TAD_comp_1241	146	+
585	chr2L	86999	87499	TAD_comp_2591	48	+
585	chr2L	114499	114999	TAD_comp_2240	76	+
586	chr2L	143499	143999	TAD_comp_2055	90	+
586	chr2L	160999	161499	TAD_comp_2375	65	+
586	chr2L	181999	182499	TAD_comp_428	221	+
586	chr2L	207499	207999	TAD_comp_2005	92	+
587	chr2L	277499	277999	TAD_comp_1449	132	+
587	chr2L	296499	296999	TAD_comp_1913	99	+
587	chr2L	305999	306499	TAD_comp_1247	146	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

TAD Boundaries (Nuc. Cycle 14) (TAD_nc14) Track Description


	Description These tracks show the putative topologically associated domain (TAD) boundaries in nuclear cycle 14 D. melanogaster embryos. The TAD boundaries were determined by Stadler MR and colleagues based on Hi-C datasets. The Manual TAD boundaries were determined by visual inspection of the Hi-C data. The Computational TAD boundaries were determined by a custom program developed by Stadler MR and colleagues. The Representative TAD boundaries correspond to the set of high confidence manual and computational TAD boundaries. The TAD boundaries were obtained from Supplementary file 1 from the manuscript by Stadler MR and colleagues. References Stadler MR, Haines JE, Eisen MB. Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo. Elife. 2017 Nov 17;6. pii: e29550.

Description