Schema for TAD Boundaries (Nuc. Cycle 14) - TAD Boundaries in Nuclear Cycle 14 Embryos

Database: dm6 Primary Table: TAD_nc14_manual Row Count: 3,129 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	18999	`int(10) unsigned`	range
`chromEnd`	19000	`int(10) unsigned`	range
`name`	TAD_manual_1	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	chr2L	18999	19000	TAD_manual_1	1000	+
585	chr2L	94999	95000	TAD_manual_2	1000	+
585	chr2L	101999	102000	TAD_manual_3	1000	+
585	chr2L	108499	108500	TAD_manual_4	1000	+
585	chr2L	115499	115500	TAD_manual_5	1000	+
586	chr2L	143499	143500	TAD_manual_6	1000	+
586	chr2L	154999	155000	TAD_manual_7	1000	+
586	chr2L	182499	182500	TAD_manual_8	1000	+
586	chr2L	206499	206500	TAD_manual_9	1000	+
586	chr2L	221999	222000	TAD_manual_10	1000	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

TAD Boundaries (Nuc. Cycle 14) (TAD_nc14) Track Description


	Description These tracks show the putative topologically associated domain (TAD) boundaries in nuclear cycle 14 D. melanogaster embryos. The TAD boundaries were determined by Stadler MR and colleagues based on Hi-C datasets. The Manual TAD boundaries were determined by visual inspection of the Hi-C data. The Computational TAD boundaries were determined by a custom program developed by Stadler MR and colleagues. The Representative TAD boundaries correspond to the set of high confidence manual and computational TAD boundaries. The TAD boundaries were obtained from Supplementary file 1 from the manuscript by Stadler MR and colleagues. References Stadler MR, Haines JE, Eisen MB. Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo. Elife. 2017 Nov 17;6. pii: e29550.

Description