Schema for TAD Boundaries (Nuc. Cycle 14) - TAD Boundaries in Nuclear Cycle 14 Embryos

Database: dm6 Primary Table: TAD_nc14_rep Row Count: 954 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	586	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	182499	`int(10) unsigned`	range
`chromEnd`	182999	`int(10) unsigned`	range
`name`	TAD_rep_415	`varchar(255)`	values
`score`	221	`int(10) unsigned`	range
`strand`	+	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
586	chr2L	182499	182999	TAD_rep_415	221	+
588	chr2L	403499	403999	TAD_rep_695	191	+
588	chr2L	420499	420999	TAD_rep_216	256	+
588	chr2L	489999	490499	TAD_rep_796	181	+
589	chr2L	541499	541999	TAD_rep_599	199	+
589	chr2L	601999	602499	TAD_rep_530	205	+
591	chr2L	825499	825999	TAD_rep_406	222	+
591	chr2L	850499	850999	TAD_rep_475	214	+
591	chr2L	870499	870999	TAD_rep_152	274	+
593	chr2L	1076999	1077499	TAD_rep_86	303	+

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

TAD Boundaries (Nuc. Cycle 14) (TAD_nc14) Track Description


	Description These tracks show the putative topologically associated domain (TAD) boundaries in nuclear cycle 14 D. melanogaster embryos. The TAD boundaries were determined by Stadler MR and colleagues based on Hi-C datasets. The Manual TAD boundaries were determined by visual inspection of the Hi-C data. The Computational TAD boundaries were determined by a custom program developed by Stadler MR and colleagues. The Representative TAD boundaries correspond to the set of high confidence manual and computational TAD boundaries. The TAD boundaries were obtained from Supplementary file 1 from the manuscript by Stadler MR and colleagues. References Stadler MR, Haines JE, Eisen MB. Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo. Elife. 2017 Nov 17;6. pii: e29550.

Description