Schema for Topological Boundaries (R5) - Topological Domain Boundaries Inferred from Chromatin States (R5)

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Database: dm6 Primary Table: domain_boundary_L3 Row Count: 1,166

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	10000	`int(10) unsigned`	range
`name`	L3_bound_1	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	chr2L	0	10000	L3_bound_1
586	chr2L	160000	170000	L3_bound_2
586	chr2L	200000	210000	L3_bound_3
586	chr2L	240000	250000	L3_bound_4
587	chr2L	270000	280000	L3_bound_5
587	chr2L	350000	360000	L3_bound_6
587	chr2L	370000	380000	L3_bound_7
589	chr2L	590000	600000	L3_bound_8
591	chr2L	840000	850000	L3_bound_9
591	chr2L	870000	880000	L3_bound_10

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Topological Boundaries (R5) (domain_boundary) Track Description


	Description This track shows the topological domain boundaries inferred from chromatin states in late embryos (LE, 14-16hr) and third instar larvae (L3). Credits The domain boundaries were obtained from the Comparative modENCODE / ENCODE web site. References Ho JKW, et al. Comparative analysis of metazoan chromatin organization. Nature 512, 449-452 (28 August 2014).

Description