Schema for S2 Zhou 30-state (R5) - 30-state Model for S2 Cells Created by Zhou and Troyanskaya (R5)
  Database: dm6    Primary Table: zhou_30states    Row Count: 265,951   Data last updated: 2022-10-21
fieldexampleSQL type info
bin 585smallint(5) unsigned range
chrom chr2Lvarchar(255) values
chromStart 5425int(10) unsigned range
chromEnd 5525int(10) unsigned range
name 30_PC_1varchar(255) values
score 0int(10) unsigned range
strand +char(1) values
thickStart 5425int(10) unsigned range
thickEnd 5525int(10) unsigned range
itemRgb 8421504int(10) unsigned range

Sample Rows
 
binchromchromStartchromEndnamescorestrandthickStartthickEnditemRgb
585chr2L5425552530_PC_10+54255525128,128,128
585chr2L5775582529_G_10+57755825211,211,211
585chr2L6075647529_G_20+60756475211,211,211
585chr2L6475662530_PC_20+64756625128,128,128
585chr2L6625712529_G_30+66257125211,211,211
585chr2L7125722530_PC_30+71257225128,128,128
585chr2L7225752529_G_40+72257525211,211,211
585chr2L7525787530_PC_40+75257875128,128,128
585chr2L7875792529_G_50+78757925211,211,211
585chr2L7925832530_PC_50+79258325128,128,128

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

S2 Zhou 30-state (R5) (zhou_30states) Track Description
 

Description

This track shows the 30-state chromatin model for Drosophila S2-DRSC cells created by Zhou and Troyanskaya, 2016.

The colors correspond to the different states in the 30-state model (see the Supplementary Information document for details):

StateDescriptionAcronymColor
01Long Intron1I1
02Long Intron2I2
03Long Intron3I3
04Long Intron4 / Weak Enhancer1I4/WE1
05Weak Enhancer2WE2
06Weak Enhancer3WE3
07Strong Enhancer3SE3
08Strong Enhancer2SE2
09Strong Enhancer1SE1
10TSS1TSS1
11TSS2TSS2
12TSS3TSS3
13TSS4TSS4
14TSS5TSS5
15Gene Start1GS1
16Gene Start2GS2
17Gene Start3GS3
18Gene Start4GS4
19Gene Start5GS5
20Gene Start DCC1GSX1
21Gene Start DCC2GSX2
22Gene End1GE1
23Gene End DCC1GEX1
24Gene End DCC2GEX2
25Gene End2GE2
26Gene End3GE3
27Heterochromatin1HET1
28Heterochromatin2HET2
29GroundG
30Polycomb RepressedPC

Credits

The datasets were retrieved from Supplementary Data 1 for the manuscript by Zhou and Troyanskaya, 2016.

Zhou J, Troyanskaya OG. Probabilistic modelling of chromatin code landscape reveals functional diversity of enhancer-like chromatin states. Nat Commun. 2016 Feb 4;7:10528.