Schema for FlyBase 6.06 Non-coding - FlyBase 6.06 Non-protein Coding Genes

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Schema for FlyBase 6.06 Non-coding - FlyBase 6.06 Non-protein Coding Genes

Database: dm6 Primary Table: flybase606_miscRNA Row Count: 467

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	232165	`int(10) unsigned`	range
`chromEnd`	232253	`int(10) unsigned`	range
`name`	snoRNA:kis-a-RA	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`thickStart`	232165	`int(10) unsigned`	range
`thickEnd`	232253	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`blockCount`	1	`int(11)`	range
`blockSizes`	88	`longblob`
`chromStarts`	0	`longblob`
`id`	FBtr0309764	`varchar(255)`	values
`description`	snoRNA:kis-a-RA	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts	id	description
chr2L	232165	232253	snoRNA:kis-a-RA	1000	-	232165	232253	0	1	88	0	FBtr0309764	snoRNA:kis-a-RA
chr2L	865365	865493	snoRNA:Me28S-U1230-RA	1000	-	865365	865493	0	1	128	0	FBtr0114307	snoRNA:Me28S-U1230-RA
chr2L	901490	901654	snRNA:U1:21D-RA	1000	-	901490	901654	0	1	164	0	FBtr0078028	snRNA:U1:21D-RA
chr2L	1432710	1432921	snRNA:U3:22A-RA	1000	+	1432710	1432921	0	1	211	0	FBtr0077928	snRNA:U3:22A-RA
chr2L	3048700	3048831	snRNA:U5:23D-RA	1000	+	3048700	3048831	0	1	131	0	FBtr0077658	snRNA:U5:23D-RA
chr2L	4085889	4086005	snoRNA:Me28S-C437-RA	1000	+	4085889	4086005	0	1	116	0	FBtr0114308	snoRNA:Me28S-C437-RA
chr2L	4457602	4457674	snoRNA:Me18S-C1831-RA	1000	-	4457602	4457674	0	1	72	0	FBtr0091653	snoRNA:Me18S-C1831-RA
chr2L	5187777	5187922	snoRNA:Psi28S-2263-RA	1000	+	5187777	5187922	0	1	145	0	FBtr0113537	snoRNA:Psi28S-2263-RA
chr2L	5202382	5202522	snoRNA:Psi18S-525k-RA	1000	+	5202382	5202522	0	1	140	0	FBtr0113538	snoRNA:Psi18S-525k-RA
chr2L	5437633	5437749	snoRNA:Me28S-A2486-RA	1000	-	5437633	5437749	0	1	116	0	FBtr0114309	snoRNA:Me28S-A2486-RA

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

FlyBase 6.06 Non-coding (fb606ncgenes) Track Description


	Description This track shows the non-protein coding genes that have been annotated by FlyBase. These annotations correspond to D. melanogaster release 6.06. Credits Thanks to FlyBase for providing these annotations. References St Pierre SE, Ponting L, Stefancsik R, McQuilton P; FlyBase Consortium. FlyBase 102 — advanced approaches to interrogating FlyBase. Nucleic Acids Res. 2014 Jan;42(Database issue):D780-8