Schema for FlyBase 6.06 Pseudogenes - FlyBase 6.06 Pseudogenes

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Schema for FlyBase 6.06 Pseudogenes - FlyBase 6.06 Pseudogenes

Database: dm6 Primary Table: fb606pseudogenes Row Count: 342

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	454753	`int(10) unsigned`	range
`chromEnd`	455313	`int(10) unsigned`	range
`name`	CR43080-RB	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`thickStart`	454753	`int(10) unsigned`	range
`thickEnd`	455313	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`blockCount`	2	`int(11)`	range
`blockSizes`	176,325	`longblob`
`chromStarts`	0,235	`longblob`
`id`	FBtr0305350	`varchar(255)`	values
`description`	CR43080-RB	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	reserved	blockCount	blockSizes	chromStarts	id	description
chr2L	454753	455313	CR43080-RB	1000	+	454753	455313	0	2	176,325	0,235	FBtr0305350	CR43080-RB
chr2L	3162514	3163289	CR31953-RA	1000	+	3162514	3163289	0	2	441,274	0,501	FBtr0077575	CR31953-RA
chr2L	3171034	3172799	CR44003-RB	1000	-	3171034	3172799	0	2	1611,98	0,1667	FBtr0339505	CR44003-RB
chr2L	3694104	3694418	CR43364-RA	1000	-	3694104	3694418	0	2	170,82	0,232	FBtr0307120	CR43364-RA
chr2L	4891326	4891845	CR45716-RA	1000	-	4891326	4891845	0	1	519	0	FBtr0346496	CR45716-RA
chr2L	5242698	5244239	CR14033-RB	1000	+	5242698	5244239	0	1	1541	0	FBtr0303308	CR14033-RB
chr2L	6972242	6972796	CR43142-RA	1000	+	6972242	6972796	0	1	554	0	FBtr0305347	CR43142-RA
chr2L	7399464	7399929	CR44079-RA	1000	+	7399464	7399929	0	1	465	0	FBtr0334837	CR44079-RA
chr2L	7839776	7840414	CR43100-RB	1000	-	7839776	7840414	0	1	638	0	FBtr0343422	CR43100-RB
chr2L	9251137	9251459	CR43734-RA	1000	-	9251137	9251459	0	1	322	0	FBtr0330023	CR43734-RA

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

FlyBase 6.06 Pseudogenes (fb606pseudogenes) Track Description


	Description This track shows the pseudogenes that have been annotated by FlyBase. These gene annotations correspond to D. melanogaster release 6.06. Credits Thanks to FlyBase for providing these annotations. References St Pierre SE, Ponting L, Stefancsik R, McQuilton P; FlyBase Consortium. FlyBase 102 — advanced approaches to interrogating FlyBase. Nucleic Acids Res. 2014 Jan;42(Database issue):D780-8