Schema for FlyBase CDS - FlyBase Coding Exons

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for FlyBase CDS - FlyBase Coding Exons

Database: dm6 Primary Table: fbcds Row Count: 63,172 Data last updated: 2024-01-05

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	11214	`int(10) unsigned`	range
`chromEnd`	11344	`int(10) unsigned`	range
`name`	l(2)gl:11_348_1	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	-	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	chr2L	11214	11344	l(2)gl:11_348_1	0	-
585	chr2L	11309	11344	l(2)gl:10_348_2	0	-
585	chr2L	11409	11518	l(2)gl:9_348_2	0	-
585	chr2L	11778	12221	l(2)gl:8_348_1	0	-
585	chr2L	12285	12928	l(2)gl:7_348_2	0	-
585	chr2L	13519	13625	l(2)gl:6_348_0	0	-
585	chr2L	13682	14874	l(2)gl:5_348_1	0	-
585	chr2L	14932	15711	l(2)gl:4_348_0	0	-
585	chr2L	14932	15648	l(2)gl:3_348_0	0	-
585	chr2L	17052	17136	l(2)gl:2_348_0	0	-

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

FlyBase CDS (fbcds) Track Description


	Description This track shows the coding exons of protein-coding genes that have been annotated by FlyBase. These coding exon annotations correspond to D. melanogaster release 6.55. Credits Thanks to FlyBase for providing these annotations. References Gramates LS, Agapite J, Attrill H, Calvi BR, Crosby MA, Dos Santos G, Goodman JL, Goutte-Gattat D, Jenkins VK, Kaufman T, Larkin A, Matthews BB, Millburn G, Strelets VB; the FlyBase Consortium. FlyBase: a guided tour of highlighted features. Genetics. 2022 Apr 4;220(4):iyac035.