Schema for FlyBase Pseudogenes - FlyBase Pseudogenes

Database: dm6 Primary Table: fbpseudogenes Row Count: 365 Data last updated: 2024-01-05

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	7528	`int(10) unsigned`	range
`chromEnd`	9484	`int(10) unsigned`	range
`name`	CR11023-RE	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`thickStart`	7528	`int(10) unsigned`	range
`thickEnd`	9484	`int(10) unsigned`	range
`reserved`	0	`int(10) unsigned`	range
`blockCount`	2	`int(11)`	range
`blockSizes`	588,1292	`longblob`
`chromStarts`	0,664	`longblob`
`id`	FBtr0475186	`varchar(255)`	values
`description`	CR11023-RE	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	thickStart	thickEnd	blockCount	blockSizes	chromStarts	id	description
chr2L	7528	9484	CR11023-RE	1000	+	7528	9484	2	588,1292	0,664	FBtr0475186	CR11023-RE
chr2L	454753	455313	CR43080-RB	1000	+	454753	455313	2	176,325	0,235	FBtr0305350	CR43080-RB
chr2L	2669227	2669622	CR46404-RA	1000	+	2669227	2669622	1	395	0	FBtr0475060	CR46404-RA
chr2L	3162514	3163289	CR31953-RA	1000	+	3162514	3163289	2	441,274	0,501	FBtr0077575	CR31953-RA
chr2L	3171034	3172799	CR44003-RB	1000	-	3171034	3172799	2	1611,98	0,1667	FBtr0339505	CR44003-RB
chr2L	3694104	3694418	CR43364-RA	1000	-	3694104	3694418	2	170,82	0,232	FBtr0307120	CR43364-RA
chr2L	3785737	3786343	CR31958-RB	1000	+	3785737	3786343	1	606	0	FBtr0445666	CR31958-RB
chr2L	4891326	4891845	CR45716-RA	1000	-	4891326	4891845	1	519	0	FBtr0346496	CR45716-RA
chr2L	5242698	5244239	CR14033-RB	1000	+	5242698	5244239	1	1541	0	FBtr0303308	CR14033-RB
chr2L	6972242	6972796	CR43142-RA	1000	+	6972242	6972796	1	554	0	FBtr0305347	CR43142-RA

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

FlyBase Pseudogenes (fbpseudogenes) Track Description


	Description This track shows the pseudogenes that have been annotated by FlyBase. These pseudogene annotations correspond to D. melanogaster release 6.55. Credits Thanks to FlyBase for providing these annotations. References Gramates LS, Agapite J, Attrill H, Calvi BR, Crosby MA, Dos Santos G, Goodman JL, Goutte-Gattat D, Jenkins VK, Kaufman T, Larkin A, Matthews BB, Millburn G, Strelets VB; the FlyBase Consortium. FlyBase: a guided tour of highlighted features. Genetics. 2022 Apr 4;220(4):iyac035.

Description