Schema for FlyBase Pseudogenes - FlyBase Pseudogenes |
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Database: dm6 Primary Table: fbpseudogenes Row Count: 365 Data last updated: 2025-01-03
| field | example | SQL type | info |
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| chrom | chr2L | varchar(255) | values |
| chromStart | 7528 | int(10) unsigned | range |
| chromEnd | 9484 | int(10) unsigned | range |
| name | CR11023-RE | varchar(255) | values |
| score | 1000 | int(10) unsigned | range |
| strand | + | char(1) | values |
| thickStart | 7528 | int(10) unsigned | range |
| thickEnd | 9484 | int(10) unsigned | range |
| reserved | 0 | int(10) unsigned | range |
| blockCount | 2 | int(11) | range |
| blockSizes | 588,1292 | longblob | |
| chromStarts | 0,664 | longblob | |
| id | FBtr0475186 | varchar(255) | values |
| description | CR11023-RE | longblob | |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | id | description |
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| chr2L | 7528 | 9484 | CR11023-RE | 1000 | + | 7528 | 9484 | 0 | 2 | 588,1292 | 0,664 | FBtr0475186 | CR11023-RE |
| chr2L | 454753 | 455313 | CR43080-RB | 1000 | + | 454753 | 455313 | 0 | 2 | 176,325 | 0,235 | FBtr0305350 | CR43080-RB |
| chr2L | 2669227 | 2669622 | CR46404-RA | 1000 | + | 2669227 | 2669622 | 0 | 1 | 395 | 0 | FBtr0475060 | CR46404-RA |
| chr2L | 3162514 | 3163289 | CR31953-RA | 1000 | + | 3162514 | 3163289 | 0 | 2 | 441,274 | 0,501 | FBtr0077575 | CR31953-RA |
| chr2L | 3171034 | 3172799 | CR44003-RB | 1000 | - | 3171034 | 3172799 | 0 | 2 | 1611,98 | 0,1667 | FBtr0339505 | CR44003-RB |
| chr2L | 3694104 | 3694418 | CR43364-RA | 1000 | - | 3694104 | 3694418 | 0 | 2 | 170,82 | 0,232 | FBtr0307120 | CR43364-RA |
| chr2L | 3785737 | 3786343 | CR31958-RB | 1000 | + | 3785737 | 3786343 | 0 | 1 | 606 | 0 | FBtr0445666 | CR31958-RB |
| chr2L | 4891326 | 4891845 | CR45716-RA | 1000 | - | 4891326 | 4891845 | 0 | 1 | 519 | 0 | FBtr0346496 | CR45716-RA |
| chr2L | 5242698 | 5244239 | CR14033-RB | 1000 | + | 5242698 | 5244239 | 0 | 1 | 1541 | 0 | FBtr0303308 | CR14033-RB |
| chr2L | 6972242 | 6972796 | CR43142-RA | 1000 | + | 6972242 | 6972796 | 0 | 1 | 554 | 0 | FBtr0305347 | CR43142-RA |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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FlyBase Pseudogenes (fbpseudogenes) Track Description
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Description
This track shows the pseudogenes that have been annotated by FlyBase.
These pseudogene annotations correspond to D. melanogaster release 6.61.
Credits
Thanks to FlyBase for providing these annotations.
References
Öztürk-Çolak A, Marygold SJ, Antonazzo G, Attrill H, Goutte-Gattat D, Jenkins VK, Matthews BB, Millburn G, Dos Santos G, Tabone CJ; FlyBase Consortium. FlyBase: updates to the Drosophila genes and genomes database. Genetics. 2024 May 7;227(1):iyad211. doi: 10.1093/genetics/iyad211. PMID: 38301657; PMCID: PMC11075543.
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