Schema for piRNA Clusters (R5) - piRNA Clusters from Brennecke et al. 2007 (R5)

Database: dm6 Primary Table: piRNA_brennecke_2007 Row Count: 95 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	2498	`int(10) unsigned`	range
`chromEnd`	11131	`int(10) unsigned`	range
`name`	piRNA_cluster33_21A	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name
585	chr2L	2498	11131	piRNA_cluster33_21A
738	chr2L	20104659	20118503	piRNA_cluster27_38C
92	chr2L	20148258	20227581	piRNA_cluster5_38C
749	chr2L	21544533	21575520	piRNA_cluster141_39E
752	chr2L	21894815	21900308	piRNA_cluster107_40B
94	chr2L	22258712	22292510	piRNA_cluster62_40F
94	chr2L	22369380	22420241	piRNA_cluster23_40F
94	chr2L	22527609	22559704	piRNA_cluster79_40F
757	chr2L	22596776	22664170	piRNA_cluster31_40F
761	chr2L	23078423	23100152	piRNA_cluster51

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

piRNA Clusters (R5) (piRNA_brennecke_2007) Track Description


	Description This track shows the piRNA clusters that were defined in Supplemental Table S2 of Brennecke et al., 2007. The coordinates for the piRNA clusters were lifted from the release 5 to the release 6 assembly. Of the 142 piRNA clusters, only 93 of them can be transferred to the release 6 assembly. This track also shows the two piRNA clusters (piRNA_cluster_42AB and piRNA_cluster_flamenco) that were annotated by FlyBase. Credits Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell. 2007 Mar 23;128(6):1089-103.

Description