Schema for GC Percent - GC Percent in 5-Base Windows

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Schema for GC Percent - GC Percent in 5-Base Windows

Database: dm6 Primary Table: gc5Base Row Count: 29,126

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5120	`int(10) unsigned`	range
`name`	chr2L.0	`varchar(255)`	values
`span`	5	`int(10) unsigned`	range
`count`	1024	`int(10) unsigned`	range
`offset`	0	`int(10) unsigned`	range
`file`	/gbdb/dm6/wib/gc5Base.wib	`varchar(255)`	values
`lowerLimit`	0	`double`	range
`dataRange`	100	`double`	range
`validCount`	1024	`int(10) unsigned`	range
`sumData`	40900	`double`	range
`sumSquares`	2178000	`double`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	span	count	offset	file	lowerLimit	dataRange	validCount	sumData	sumSquares
585	chr2L	0	5120	chr2L.0	5	1024	0	/gbdb/dm6/wib/gc5Base.wib	0	100	1024	40900	2178000
585	chr2L	5120	10240	chr2L.1	5	1024	1024	/gbdb/dm6/wib/gc5Base.wib	0	100	1024	38640	2039200
585	chr2L	10240	15360	chr2L.2	5	1024	2048	/gbdb/dm6/wib/gc5Base.wib	0	100	1024	38760	2030400
585	chr2L	15360	20480	chr2L.3	5	1024	3072	/gbdb/dm6/wib/gc5Base.wib	0	100	1024	34000	1663200
585	chr2L	20480	25600	chr2L.4	5	1024	4096	/gbdb/dm6/wib/gc5Base.wib	0	100	1024	40040	2141600
585	chr2L	25600	30720	chr2L.5	5	1024	5120	/gbdb/dm6/wib/gc5Base.wib	0	100	1024	39540	2083600
585	chr2L	30720	35840	chr2L.6	5	1024	6144	/gbdb/dm6/wib/gc5Base.wib	0	100	1024	44300	2451600
585	chr2L	35840	40960	chr2L.7	5	1024	7168	/gbdb/dm6/wib/gc5Base.wib	0	100	1024	45820	2583600
585	chr2L	40960	46080	chr2L.8	5	1024	8192	/gbdb/dm6/wib/gc5Base.wib	0	100	1024	39320	2067200
585	chr2L	46080	51200	chr2L.9	5	1024	9216	/gbdb/dm6/wib/gc5Base.wib	0	100	1024	44040	2392000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

GC Percent (gc5Base) Track Description


	Description The GC percent track shows the percentage of G (guanine) and C (cytosine) bases in 5-base windows. High GC content is typically associated with gene-rich areas. This track may be configured in a variety of ways to highlight different apsects of the displayed information. Click the "Graph configuration help" link for an explanation of the configuration options. Credits The data and presentation of this graph were prepared by Hiram Clawson.