Schema for Eye Discs ATAC-Seq - ATAC-Seq of D. melanogaster Eye Discs

Database: dm6 Primary Table: GSE102439_eyediscs_macs Row Count: 19,482 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5476	`int(10) unsigned`	range
`chromEnd`	6051	`int(10) unsigned`	range
`name`	GSE102439_dm6_atac_macs_peak_1	`varchar(255)`	values
`score`	689	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	12.4526	`float`	range
`pValue`	72.1312	`float`	range
`qValue`	68.9319	`float`	range
`peak`	324	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	5476	6051	GSE102439_dm6_atac_macs_peak_1	689	.	12.4526	72.1312	68.9319	324
585	chr2L	35492	35987	GSE102439_dm6_atac_macs_peak_2	268	.	6.44796	28.9737	26.8691	196
585	chr2L	39363	39661	GSE102439_dm6_atac_macs_peak_3	120	.	4.31235	13.787	12.0885	139
585	chr2L	47289	47523	GSE102439_dm6_atac_macs_peak_4	90	.	3.97423	10.6811	9.07942	112
585	chr2L	59073	59535	GSE102439_dm6_atac_macs_peak_5	658	.	11.2412	69.0082	65.8939	221
585	chr2L	66583	67123	GSE102439_dm6_atac_macs_peak_6	632	.	9.57249	66.2784	63.2374	321
585	chr2L	67217	67490	GSE102439_dm6_atac_macs_peak_7	224	.	5	24.4811	22.4895	138
585	chr2L	72141	74134	GSE102439_dm6_atac_macs_peak_8a	412	.	5.77367	43.7093	41.2452	284
585	chr2L	72141	74134	GSE102439_dm6_atac_macs_peak_8b	185	.	3.94737	20.4816	18.5915	717
585	chr2L	72141	74134	GSE102439_dm6_atac_macs_peak_8c	300	.	4.99398	32.2152	30.0294	1185

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Eye Discs ATAC-Seq (GSE102439_atac_eyediscs) Track Description


	Description These tracks show the results from Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq) of D. melanogaster eye-antennal discs from 3rd instar larvae. The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The Irreproducible Discovery Rate (IDR) peak calls were produced by the idr program using a global IDR threshold of 0.05. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA397749. References Jacobs J, Atkins M, Davie K, Imrichova H, Romanelli L, Christiaens V, Hulselmans G, Potier D, Wouters J, Taskiran II, Paciello G, González-Blas CB, Koldere D, Aibar S, Halder G, Aerts S. The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes. Nat Genet. 2018 Jul;50(7):1011-1020. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

Description