Schema for TFBS HOT Spots (R5) - Transcription Factor Binding Sites HOT Spots (R5)

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Schema for TFBS HOT Spots (R5) - Transcription Factor Binding Sites HOT Spots (R5)

Database: dm6 Primary Table: TFBS_HSA_sites Row Count: 38,560

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	4979	`int(10) unsigned`	range
`chromEnd`	6482	`int(10) unsigned`	range
`name`	TFBS_HSA_000001	`varchar(255)`	values
`score`	627	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`id`	FBsf0000343845	`varchar(255)`	values
`description`	bound_moiety=cad,hb,twi,gt,...	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	id	description
chr2L	4979	6482	TFBS_HSA_000001	627	+	FBsf0000343845	bound_moiety=cad,hb,twi,gt,Med,dl
chr2L	10195	10496	TFBS_HSA_000002	100	+	FBsf0000343846	bound_moiety=ttk
chr2L	12829	13132	TFBS_HSA_000003	100	+	FBsf0000343847	bound_moiety=inv
chr2L	13944	14273	TFBS_HSA_000004	101	+	FBsf0000343848	bound_moiety=sens
chr2L	14872	15207	TFBS_HSA_000005	200	+	FBsf0000343849	bound_moiety=sens,cad
chr2L	16795	17302	TFBS_HSA_000006	188	+	FBsf0000343850	bound_moiety=disco,dl
chr2L	18101	18632	TFBS_HSA_000007	208	+	FBsf0000343851	bound_moiety=zfh1,kn
chr2L	18219	19790	TFBS_HSA_000008	214	+	FBsf0000343852	bound_moiety=kn,Med,dl
chr2L	19519	19998	TFBS_HSA_000009	107	+	FBsf0000343853	bound_moiety=dl
chr2L	20886	21327	TFBS_HSA_000010	198	+	FBsf0000343854	bound_moiety=zfh1,kn

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

TFBS HOT Spots (R5) (TFBS_HSA_sites) Track Description


	Description This track shows the regions of the genome that are enriched in transcription factor binding sites. These regions are defined by the High Occupancy Target (HOT) Spot Analysis (HSA) of ChIP-chip and ChIP-seq datasets for 41 different transcription factors. Credits Thanks to FlyBase for providing these annotations. References Nègre N, et al. A cis-regulatory map of the Drosophila genome. Nature. 2011 Mar 24;471(7339):527-31.