Schema for Embryos ATAC-Seq - ATAC-Seq of Drosophila Embryos

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Schema for Embryos ATAC-Seq - ATAC-Seq of Drosophila Embryos

Database: dm6 Primary Table: atac_embryos_macs_logLR Row Count: 1 Data last updated: 2022-10-20

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/atacseq/atac_...	`varchar(255)`	values

Sample Rows

fileName
/gbdb/dm6/bbi/atacseq/atac_embryos_macs_logLR.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Embryos ATAC-Seq (atac_embryos) Track Description


	Description These tracks show the results from Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq) of D. melanogaster 2-4hr embryos. The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA284259. Credits Koenecke N, Johnston J, Gaertner B, Natarajan M, Zeitlinger J. Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis. Genome Biol. 2016 Sep 27;17(1):196. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.