Schema for 3rd Instar Larvae ATAC-Seq - ATAC-Seq of Whole 3rd Instar Larvae

Database: dm6 Primary Table: atac_larvae_macs Row Count: 39,853 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5127	`int(10) unsigned`	range
`chromEnd`	5317	`int(10) unsigned`	range
`name`	atac_larvae_macs_peak_1	`varchar(255)`	values
`score`	102	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.67839	`float`	range
`pValue`	11.6781	`float`	range
`qValue`	10.2518	`float`	range
`peak`	89	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	5127	5317	atac_larvae_macs_peak_1	102	.	2.67839	11.6781	10.2518	89
585	chr2L	5482	6048	atac_larvae_macs_peak_2	802	.	7.09987	84.0117	80.2312	348
585	chr2L	6644	6787	atac_larvae_macs_peak_3	62	.	2.25325	7.49359	6.22061	69
585	chr2L	7730	8182	atac_larvae_macs_peak_4a	43	.	1.97546	5.56091	4.3738	113
585	chr2L	7730	8182	atac_larvae_macs_peak_4b	47	.	2.00302	5.90638	4.70325	357
585	chr2L	8756	9191	atac_larvae_macs_peak_5	65	.	2.16812	7.79865	6.51552	102
585	chr2L	16231	16412	atac_larvae_macs_peak_6	61	.	2.23759	7.39525	6.12821	92
585	chr2L	18561	18710	atac_larvae_macs_peak_7	138	.	2.87955	15.3727	13.8265	68
585	chr2L	18857	19240	atac_larvae_macs_peak_8a	139	.	2.87655	15.5266	13.974	88
585	chr2L	18857	19240	atac_larvae_macs_peak_8b	42	.	1.94553	5.457	4.27385	316

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

3rd Instar Larvae ATAC-Seq (atac_larvae) Track Description


	Description These tracks show the results from Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq) of whole D. melanogaster 3rd instar larvae. The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the Gene Expression Omnibus database at NCBI under the accession number GSE96922. References Meers MP, Henriques T, Lavender CA, McKay DJ, Strahl BD, Duronio RJ, Adelman K, Matera AG. Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity. Elife. 2017 Mar 27;6. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

Description