Schema for 3rd Instar Larvae ATAC-Seq - ATAC-Seq of Whole 3rd Instar Larvae

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Schema for 3rd Instar Larvae ATAC-Seq - ATAC-Seq of Whole 3rd Instar Larvae

Database: dm6 Primary Table: atac_larvae_macs_logLR Row Count: 1 Data last updated: 2022-10-20

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/atacseq/atac_...	`varchar(255)`	values

Sample Rows

fileName
/gbdb/dm6/bbi/atacseq/atac_larvae_macs_logLR.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

3rd Instar Larvae ATAC-Seq (atac_larvae) Track Description


	Description These tracks show the results from Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq) of whole D. melanogaster 3rd instar larvae. The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the Gene Expression Omnibus database at NCBI under the accession number GSE96922. References Meers MP, Henriques T, Lavender CA, McKay DJ, Strahl BD, Duronio RJ, Adelman K, Matera AG. Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity. Elife. 2017 Mar 27;6. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.