Schema for Detected DHS Positions (Embryos) - DHS Peaks Identified by MACS (Embryos)

Database: dm6 Primary Table: dm6_dnaseI_stage10_macs Row Count: 28,074

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5432	`int(10) unsigned`	range
`chromEnd`	5971	`int(10) unsigned`	range
`name`	dm6_dnaseI_stage10_peak_1	`varchar(255)`	values
`score`	5185	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	21.3445	`float`	range
`pValue`	521.53	`float`	range
`qValue`	518.505	`float`	range
`peak`	390	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	5432	5971	dm6_dnaseI_stage10_peak_1	5185	.	21.3445	521.53	518.505	390
585	chr2L	6197	6389	dm6_dnaseI_stage10_peak_2	191	.	3.2591	20.8917	19.1984	91
585	chr2L	7462	7596	dm6_dnaseI_stage10_peak_3	230	.	3.39911	24.8079	23.0702	23
585	chr2L	8867	8999	dm6_dnaseI_stage10_peak_4	115	.	2.49453	13.1699	11.592	36
585	chr2L	12513	12879	dm6_dnaseI_stage10_peak_5	89	.	2.4325	10.4718	8.95013	76
585	chr2L	15196	15384	dm6_dnaseI_stage10_peak_6	87	.	2.29497	10.2444	8.72972	47
585	chr2L	15919	16032	dm6_dnaseI_stage10_peak_7	69	.	2.14215	8.42838	6.95917	84
585	chr2L	16338	16451	dm6_dnaseI_stage10_peak_8	159	.	2.83012	17.5728	15.9228	73
585	chr2L	17542	17841	dm6_dnaseI_stage10_peak_9	760	.	5.35522	78.1259	76.0518	107
585	chr2L	18224	18349	dm6_dnaseI_stage10_peak_10	337	.	3.55158	35.6002	33.7661	108

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Detected DHS Positions (Embryos) (dhs_embryos_macs) Track Description


	Description This track shows the positions of DNase I hypersensitive sites (DHS) identified by MACS during different stages of Drosophila embryo development. Credits The dataset was retrieved from the NCBI Sequence Read Archive (SRA) under the accession number SRP002474. Zhang Y, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Thomas S, et al. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol. 2011;12(5):R43.

Description