Schema for Detected DHS Positions (Embryos) - DHS Peaks Identified by MACS (Embryos)

Database: dm6 Primary Table: dm6_dnaseI_stage11_macs Row Count: 18,189

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5559	`int(10) unsigned`	range
`chromEnd`	5951	`int(10) unsigned`	range
`name`	dm6_dnaseI_stage11_peak_1	`varchar(255)`	values
`score`	226	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	4.2286	`float`	range
`pValue`	24.4843	`float`	range
`qValue`	22.6182	`float`	range
`peak`	331	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	5559	5951	dm6_dnaseI_stage11_peak_1	226	.	4.2286	24.4843	22.6182	331
585	chr2L	8824	9023	dm6_dnaseI_stage11_peak_2	62	.	2.51431	7.82587	6.22634	75
585	chr2L	15119	15211	dm6_dnaseI_stage11_peak_3	38	.	2.17145	5.38651	3.86296	28
585	chr2L	18560	18711	dm6_dnaseI_stage11_peak_4	684	.	6.6564	70.7062	68.4929	67
585	chr2L	18794	19089	dm6_dnaseI_stage11_peak_5	889	.	7.6876	91.3064	88.9866	149
585	chr2L	19151	19244	dm6_dnaseI_stage11_peak_6	71	.	2.43318	8.74431	7.12156	57
585	chr2L	21402	21520	dm6_dnaseI_stage11_peak_7	590	.	6.32608	61.2555	59.0973	71
585	chr2L	21564	21869	dm6_dnaseI_stage11_peak_8	1668	.	11.4844	169.483	166.858	171
585	chr2L	27053	27323	dm6_dnaseI_stage11_peak_9	119	.	3.20002	13.6916	11.9697	119
585	chr2L	27892	28275	dm6_dnaseI_stage11_peak_10	266	.	4.57146	28.5235	26.6148	175

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Detected DHS Positions (Embryos) (dhs_embryos_macs) Track Description


	Description This track shows the positions of DNase I hypersensitive sites (DHS) identified by MACS during different stages of Drosophila embryo development. Credits The dataset was retrieved from the NCBI Sequence Read Archive (SRA) under the accession number SRP002474. Zhang Y, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Thomas S, et al. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol. 2011;12(5):R43.

Description