Schema for Detected DHS Positions (Embryos) - DHS Peaks Identified by MACS (Embryos)

Database: dm6 Primary Table: dm6_dnaseI_stage14_macs Row Count: 21,233

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5723	`int(10) unsigned`	range
`chromEnd`	5870	`int(10) unsigned`	range
`name`	dm6_dnaseI_stage14_peak_1	`varchar(255)`	values
`score`	48	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.34943	`float`	range
`pValue`	6.46767	`float`	range
`qValue`	4.86815	`float`	range
`peak`	86	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	5723	5870	dm6_dnaseI_stage14_peak_1	48	.	2.34943	6.46767	4.86815	86
585	chr2L	16278	16444	dm6_dnaseI_stage14_peak_2	175	.	3.81782	19.4433	17.5301	92
585	chr2L	18594	18706	dm6_dnaseI_stage14_peak_3	288	.	4.3286	30.8898	28.8156	37
585	chr2L	18783	19290	dm6_dnaseI_stage14_peak_4	712	.	6.89959	73.7091	71.2652	160
585	chr2L	21415	21513	dm6_dnaseI_stage14_peak_5	205	.	3.80999	22.5509	20.5903	53
585	chr2L	21575	21860	dm6_dnaseI_stage14_peak_6	2021	.	13.4179	205.258	202.186	181
585	chr2L	22217	22304	dm6_dnaseI_stage14_peak_7	43	.	2.16078	5.96765	4.3938	36
585	chr2L	35573	35956	dm6_dnaseI_stage14_peak_8	183	.	3.87216	20.3019	18.3754	107
585	chr2L	40427	40524	dm6_dnaseI_stage14_peak_9	77	.	2.65132	9.46178	7.76495	57
585	chr2L	42093	42487	dm6_dnaseI_stage14_peak_10	199	.	4.05276	21.9488	19.9954	184

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Detected DHS Positions (Embryos) (dhs_embryos_macs) Track Description


	Description This track shows the positions of DNase I hypersensitive sites (DHS) identified by MACS during different stages of Drosophila embryo development. Credits The dataset was retrieved from the NCBI Sequence Read Archive (SRA) under the accession number SRP002474. Zhang Y, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Thomas S, et al. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol. 2011;12(5):R43.

Description