Schema for Detected DHS Positions (Embryos) - DHS Peaks Identified by MACS (Embryos)

Database: dm6 Primary Table: dm6_dnaseI_stage5_macs Row Count: 21,248

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5538	`int(10) unsigned`	range
`chromEnd`	6015	`int(10) unsigned`	range
`name`	dm6_dnaseI_stage5_peak_1	`varchar(255)`	values
`score`	1724	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	13.1343	`float`	range
`pValue`	174.808	`float`	range
`qValue`	172.4	`float`	range
`peak`	243	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	5538	6015	dm6_dnaseI_stage5_peak_1	1724	.	13.1343	174.808	172.4	243
585	chr2L	7553	8026	dm6_dnaseI_stage5_peak_2	136	.	3.25974	15.3219	13.6478	42
585	chr2L	8231	8357	dm6_dnaseI_stage5_peak_3	28	.	1.92496	4.29526	2.85232	117
585	chr2L	8714	9020	dm6_dnaseI_stage5_peak_4	285	.	4.29634	30.3404	28.5212	249
585	chr2L	9159	9238	dm6_dnaseI_stage5_peak_5	43	.	2.10926	5.88976	4.39046	25
585	chr2L	12416	12593	dm6_dnaseI_stage5_peak_6	75	.	2.55815	9.07842	7.50033	134
585	chr2L	15233	15382	dm6_dnaseI_stage5_peak_7	66	.	2.43467	8.21845	6.65834	43
585	chr2L	17542	17629	dm6_dnaseI_stage5_peak_8	171	.	3.09663	18.8728	17.1577	37
585	chr2L	18266	18357	dm6_dnaseI_stage5_peak_9	332	.	4.07349	35.1438	33.2892	66
585	chr2L	18562	18708	dm6_dnaseI_stage5_peak_10	618	.	5.49964	63.8573	61.8422	76

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Detected DHS Positions (Embryos) (dhs_embryos_macs) Track Description


	Description This track shows the positions of DNase I hypersensitive sites (DHS) identified by MACS during different stages of Drosophila embryo development. Credits The dataset was retrieved from the NCBI Sequence Read Archive (SRA) under the accession number SRP002474. Zhang Y, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Thomas S, et al. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol. 2011;12(5):R43.

Description