Schema for Detected DHS Positions (Embryos) - DHS Peaks Identified by MACS (Embryos)

Database: dm6 Primary Table: dm6_dnaseI_stage9_macs Row Count: 20,012

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5533	`int(10) unsigned`	range
`chromEnd`	5993	`int(10) unsigned`	range
`name`	dm6_dnaseI_stage9_peak_1	`varchar(255)`	values
`score`	1366	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	10.2611	`float`	range
`pValue`	138.788	`float`	range
`qValue`	136.618	`float`	range
`peak`	311	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	5533	5993	dm6_dnaseI_stage9_peak_1	1366	.	10.2611	138.788	136.618	311
585	chr2L	7490	7813	dm6_dnaseI_stage9_peak_2	108	.	2.83493	12.4038	10.8239	123
585	chr2L	8229	8310	dm6_dnaseI_stage9_peak_3	30	.	1.89023	4.42904	3.00062	24
585	chr2L	8824	9006	dm6_dnaseI_stage9_peak_4	92	.	2.58116	10.8493	9.29029	151
585	chr2L	17537	17640	dm6_dnaseI_stage9_peak_5	352	.	3.75252	37.0822	35.2982	36
585	chr2L	18268	18353	dm6_dnaseI_stage9_peak_6	282	.	3.38129	30.0356	28.2959	64
585	chr2L	18551	18707	dm6_dnaseI_stage9_peak_7	1253	.	7.0231	127.459	125.322	76
585	chr2L	18843	19060	dm6_dnaseI_stage9_peak_8	1051	.	6.37063	107.266	105.191	99
585	chr2L	20595	20676	dm6_dnaseI_stage9_peak_9	123	.	2.4941	13.9995	12.3984	61
585	chr2L	21365	21513	dm6_dnaseI_stage9_peak_10	1082	.	6.62616	110.341	108.256	68

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Detected DHS Positions (Embryos) (dhs_embryos_macs) Track Description


	Description This track shows the positions of DNase I hypersensitive sites (DHS) identified by MACS during different stages of Drosophila embryo development. Credits The dataset was retrieved from the NCBI Sequence Read Archive (SRA) under the accession number SRP002474. Zhang Y, et al. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137. Thomas S, et al. Dynamic reprogramming of chromatin accessibility during Drosophila embryo development. Genome Biol. 2011;12(5):R43.

Description