Schema for Embryos FAIRE-Seq - FAIRE-Seq of Drosophila Embryos

Database: dm6 Primary Table: faire_e16_18hr_macs Row Count: 26,322 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	47	`int(10) unsigned`	range
`chromEnd`	517	`int(10) unsigned`	range
`name`	faire_e16-18hr_macs_peak_1a	`varchar(255)`	values
`score`	45	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.84574	`float`	range
`pValue`	5.96177	`float`	range
`qValue`	4.52988	`float`	range
`peak`	135	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	47	517	faire_e16-18hr_macs_peak_1a	45	.	2.84574	5.96177	4.52988	135
585	chr2L	47	517	faire_e16-18hr_macs_peak_1b	73	.	3.03812	8.85887	7.31548	371
585	chr2L	753	1437	faire_e16-18hr_macs_peak_2a	64	.	2.95398	7.96031	6.45088	126
585	chr2L	753	1437	faire_e16-18hr_macs_peak_2b	31	.	2.42022	4.53971	3.18532	474
585	chr2L	753	1437	faire_e16-18hr_macs_peak_2c	31	.	2.09975	4.45356	3.11175	598
585	chr2L	1648	1873	faire_e16-18hr_macs_peak_3	103	.	3.71845	11.9478	10.3189	140
585	chr2L	2109	2730	faire_e16-18hr_macs_peak_4a	103	.	3.43244	12.0021	10.365	118
585	chr2L	2109	2730	faire_e16-18hr_macs_peak_4b	53	.	2.95236	6.8331	5.3682	469
585	chr2L	3048	3270	faire_e16-18hr_macs_peak_5	124	.	4.00257	14.1115	12.4221	112
585	chr2L	3482	3817	faire_e16-18hr_macs_peak_6	50	.	2.47222	6.5022	5.04536	79

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Embryos FAIRE-Seq (faire_embryos) Track Description


	Description These tracks show the results from Formaldehyde-Assisted Isolation of Regulatory Elements Sequencing (FAIRE-Seq) of Drosophila embryos. The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA168643. Credits McKay DJ, Lieb JD. A common set of DNA regulatory elements shapes Drosophila appendages. Dev Cell. 2013 Nov 11;27(3):306-18. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

Description