Schema for Embryos FAIRE-Seq - FAIRE-Seq of Drosophila Embryos

JavaScript is disabled in your web browser

You must have JavaScript enabled in your web browser to use the Genome Browser

Schema for Embryos FAIRE-Seq - FAIRE-Seq of Drosophila Embryos

Database: dm6 Primary Table: faire_e2_4hr_logLR Row Count: 1 Data last updated: 2022-10-21

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/zelda_chipseq...	`varchar(255)`	values

Sample Rows

fileName
/gbdb/dm6/bbi/zelda_chipseq/faire_e2_4hr_macs_logLR.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Embryos FAIRE-Seq (faire_embryos) Track Description


	Description These tracks show the results from Formaldehyde-Assisted Isolation of Regulatory Elements Sequencing (FAIRE-Seq) of Drosophila embryos. The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA168643. Credits McKay DJ, Lieb JD. A common set of DNA regulatory elements shapes Drosophila appendages. Dev Cell. 2013 Nov 11;27(3):306-18. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.