Schema for Embryos FAIRE-Seq - FAIRE-Seq of Drosophila Embryos

Database: dm6 Primary Table: faire_e2_4hr_macs Row Count: 26,853 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	133	`int(10) unsigned`	range
`chromEnd`	4198	`int(10) unsigned`	range
`name`	faire_e2-4hr_macs_peak_1b	`varchar(255)`	values
`score`	112	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	3.31049	`float`	range
`pValue`	13.121	`float`	range
`qValue`	11.2214	`float`	range
`peak`	732	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	133	4198	faire_e2-4hr_macs_peak_1b	112	.	3.31049	13.121	11.2214	732
585	chr2L	133	4198	faire_e2-4hr_macs_peak_1a	63	.	2.40763	8.05555	6.389	242
585	chr2L	133	4198	faire_e2-4hr_macs_peak_1c	63	.	2.7258	8.04149	6.37547	971
585	chr2L	133	4198	faire_e2-4hr_macs_peak_1d	43	.	2.18646	5.80593	4.30553	1237
585	chr2L	133	4198	faire_e2-4hr_macs_peak_1e	151	.	3.75644	17.2084	15.1647	1641
585	chr2L	133	4198	faire_e2-4hr_macs_peak_1f	27	.	1.92662	4.09608	2.75308	2064
585	chr2L	133	4198	faire_e2-4hr_macs_peak_1g	56	.	2.2764	7.26566	5.66032	2586
585	chr2L	133	4198	faire_e2-4hr_macs_peak_1h	122	.	3.40768	14.1724	12.231	3017
585	chr2L	133	4198	faire_e2-4hr_macs_peak_1i	44	.	2.12721	5.95855	4.44991	3480
585	chr2L	133	4198	faire_e2-4hr_macs_peak_1j	82	.	2.63226	10.0433	8.26598	3921

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Embryos FAIRE-Seq (faire_embryos) Track Description


	Description These tracks show the results from Formaldehyde-Assisted Isolation of Regulatory Elements Sequencing (FAIRE-Seq) of Drosophila embryos. The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA168643. Credits McKay DJ, Lieb JD. A common set of DNA regulatory elements shapes Drosophila appendages. Dev Cell. 2013 Nov 11;27(3):306-18. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

Description