Schema for Embryos FAIRE-Seq - FAIRE-Seq of Drosophila Embryos

Database: dm6 Primary Table: faire_e6_8hr_macs Row Count: 20,600 Data last updated: 2022-10-21

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	390	`int(10) unsigned`	range
`chromEnd`	547	`int(10) unsigned`	range
`name`	faire_e6-8hr_macs_peak_1	`varchar(255)`	values
`score`	28	`int(10) unsigned`	range
`strand`	.	`char(1)`	values
`signalValue`	2.06503	`float`	range
`pValue`	4.39626	`float`	range
`qValue`	2.89476	`float`	range
`peak`	55	`int(11)`	range

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand	signalValue	pValue	qValue	peak
585	chr2L	390	547	faire_e6-8hr_macs_peak_1	28	.	2.06503	4.39626	2.89476	55
585	chr2L	764	956	faire_e6-8hr_macs_peak_2	53	.	2.54446	7.05584	5.35672	114
585	chr2L	1143	1424	faire_e6-8hr_macs_peak_3a	37	.	2.48223	5.31469	3.73901	80
585	chr2L	1143	1424	faire_e6-8hr_macs_peak_3b	24	.	1.94133	3.91757	2.46618	224
585	chr2L	1661	1851	faire_e6-8hr_macs_peak_4a	34	.	2.38997	4.98659	3.43481	56
585	chr2L	1661	1851	faire_e6-8hr_macs_peak_4b	49	.	2.59834	6.57687	4.90483	105
585	chr2L	2074	2397	faire_e6-8hr_macs_peak_5a	27	.	2.31902	4.18987	2.70077	63
585	chr2L	2074	2397	faire_e6-8hr_macs_peak_5b	79	.	3.04662	9.85331	7.98051	200
585	chr2L	3002	3259	faire_e6-8hr_macs_peak_6	61	.	2.72621	7.86097	6.11269	143
585	chr2L	3496	3744	faire_e6-8hr_macs_peak_7	24	.	1.94133	3.91757	2.46618	74

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Embryos FAIRE-Seq (faire_embryos) Track Description


	Description These tracks show the results from Formaldehyde-Assisted Isolation of Regulatory Elements Sequencing (FAIRE-Seq) of Drosophila embryos. The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA168643. Credits McKay DJ, Lieb JD. A common set of DNA regulatory elements shapes Drosophila appendages. Dev Cell. 2013 Nov 11;27(3):306-18. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.

Description