Schema for Origins of Replication (R5) - Early Activating Origins of Replication (R5)

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Schema for Origins of Replication (R5) - Early Activating Origins of Replication (R5)

Database: dm6 Primary Table: ORC_metapeaks Row Count: 7,244

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	5590	`int(10) unsigned`	range
`chromEnd`	5868	`int(10) unsigned`	range
`name`	Orc2_mE_1	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`id`	FBsf0000186965	`varchar(255)`	values
`description`	bound_moiety=Orc2	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	id	description
chr2L	5590	5868	Orc2_mE_1	0	+	FBsf0000186965	bound_moiety=Orc2
chr2L	66736	67097	Orc2_mE_2	0	+	FBsf0000186966	bound_moiety=Orc2
chr2L	72533	72758	Orc2_mE_3	0	+	FBsf0000186967	bound_moiety=Orc2
chr2L	73094	73394	Orc2_mE_4	0	+	FBsf0000186968	bound_moiety=Orc2
chr2L	73853	73951	Orc2_mE_5	0	+	FBsf0000186969	bound_moiety=Orc2
chr2L	102267	102367	Orc2_mE_6	0	+	FBsf0000186970	bound_moiety=Orc2
chr2L	107865	108277	Orc2_mE_7	0	+	FBsf0000186971	bound_moiety=Orc2
chr2L	120512	120883	Orc2_mE_8	0	+	FBsf0000186972	bound_moiety=Orc2
chr2L	121548	121780	Orc2_mE_9	0	+	FBsf0000186973	bound_moiety=Orc2
chr2L	129070	129397	Orc2_mE_10	0	+	FBsf0000186974	bound_moiety=Orc2

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Origins of Replication (R5) (origins_of_replication) Track Description


	Description This track shows the locations of the early activating origins of replication in Kc, S2, and BG3 cells that have been identified by the modENCODE Origins of Replication Group. The "Early Origin Meta-Peaks" subtrack corresponds to early origins of replications that were identified by the genome-wide profiling of 5-bromo-2-deoxyuridine (BrdU). The "ORC Meta-Peaks" subtrack corresponds to regions that show enrichment of Orc2 in at least one cell lines. Credits Thanks to FlyBase for providing these annotations. References Eaton ML, et al. Chromatin signatures of the Drosophila replication program. Genome Res. 2011 Feb;21(2):164-74.