Schema for Origins of Replication (R5) - Early Activating Origins of Replication (R5)
  Database: dm6    Primary Table: early_origins_metapeaks    Row Count: 818
fieldexampleSQL type info
chrom chr2Lvarchar(255) values
chromStart 7740int(10) unsigned range
chromEnd 18432int(10) unsigned range
name eORI_mE_1varchar(255) values
score 0int(10) unsigned range
strand +char(1) values
id FBsf0000186142varchar(255) values
description Name=eORI_mE_1longblob  

Sample Rows
 
chromchromStartchromEndnamescorestrandiddescription
chr2L774018432eORI_mE_10+FBsf0000186142Name=eORI_mE_1
chr2L2278099170eORI_mE_20+FBsf0000186143Name=eORI_mE_2
chr2L105210183197eORI_mE_30+FBsf0000186144Name=eORI_mE_3
chr2L415800439856eORI_mE_40+FBsf0000186145Name=eORI_mE_4
chr2L459470535908eORI_mE_50+FBsf0000186146Name=eORI_mE_5
chr2L844380879878eORI_mE_60+FBsf0000186147Name=eORI_mE_6
chr2L14125801475755eORI_mE_70+FBsf0000186148Name=eORI_mE_7
chr2L16584101709405eORI_mE_80+FBsf0000186149Name=eORI_mE_8
chr2L19724902018758eORI_mE_90+FBsf0000186150Name=eORI_mE_9
chr2L21459102200539eORI_mE_100+FBsf0000186151Name=eORI_mE_10

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Origins of Replication (R5) (origins_of_replication) Track Description
 

Description

This track shows the locations of the early activating origins of replication in Kc, S2, and BG3 cells that have been identified by the modENCODE Origins of Replication Group. The "Early Origin Meta-Peaks" subtrack corresponds to early origins of replications that were identified by the genome-wide profiling of 5-bromo-2-deoxyuridine (BrdU). The "ORC Meta-Peaks" subtrack corresponds to regions that show enrichment of Orc2 in at least one cell lines.

Credits

Thanks to FlyBase for providing these annotations.

References

Eaton ML, et al. Chromatin signatures of the Drosophila replication program. Genome Res. 2011 Feb;21(2):164-74.