Schema for Schulz FAIRE-Seq - FAIRE-Seq of Drosophila Embryos (Schulz et al. 2015)

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Schema for Schulz FAIRE-Seq - FAIRE-Seq of Drosophila Embryos (Schulz et al. 2015)

Database: dm6 Primary Table: zld_faire_macs_logLR Row Count: 1 Data last updated: 2022-10-21

field	example	SQL type	info
`fileName`	/gbdb/dm6/bbi/schulz_faire/...	`varchar(255)`	values

Sample Rows

fileName
/gbdb/dm6/bbi/schulz_faire/zld_faire_macs_logLR.bw

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Schulz FAIRE-Seq (schulz_faire) Track Description


	Description These tracks show the results from Formaldehyde-Assisted Isolation of Regulatory Elements Sequencing (FAIRE-Seq) of 2-3 hour Drosophila embryos lacking maternal Zelda (zldM-) and of control embryos (yw). The peak calls and the log likelihood ratio evidence tracks were produced by MACS2. The datasets were obtained from the NCBI BioProject database under the accession number PRJNA275186. Credits Schulz KN, Bondra ER, Moshe A, Villalta JE, Lieb JD, Kaplan T, McKay DJ, Harrison MM. Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo. Genome Res. 2015 Nov;25(11):1715-26. Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biol. 2008;9(9):R137.