Schema for Silencers (R5) - Putative Polycomb Response Elements (Silencers) (R5)

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Schema for Silencers (R5) - Putative Polycomb Response Elements (Silencers) (R5)

Database: dm6 Primary Table: silencers Row Count: 537

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	377455	`int(10) unsigned`	range
`chromEnd`	377891	`int(10) unsigned`	range
`name`	mE1_HDAC_PRE_00146	`varchar(255)`	values
`score`	0	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`id`	FBsf0000343329	`varchar(255)`	values
`description`	bound_moiety=Rpd3,HDAC4	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	id	description
chr2L	377455	377891	mE1_HDAC_PRE_00146	0	+	FBsf0000343329	bound_moiety=Rpd3,HDAC4
chr2L	519840	520317	mE1_HDAC_PRE_00147	0	+	FBsf0000343330	bound_moiety=Rpd3,HDAC4
chr2L	576564	577502	mE1_HDAC_PRE_00151	0	+	FBsf0000343331	bound_moiety=Rpd3,HDAC4
chr2L	594302	595005	mE1_HDAC_PRE_00153	0	+	FBsf0000343332	bound_moiety=Rpd3,HDAC4
chr2L	597247	598180	mE1_HDAC_PRE_00154	0	+	FBsf0000343333	bound_moiety=Rpd3,HDAC4
chr2L	1430246	1430558	mE1_HDAC_PRE_00155	0	+	FBsf0000343334	bound_moiety=Rpd3,HDAC4
chr2L	2451221	2451777	mE1_HDAC_PRE_00156	0	+	FBsf0000343335	bound_moiety=Rpd3,HDAC4
chr2L	3538116	3538623	mE1_HDAC_PRE_00157	0	+	FBsf0000343336	bound_moiety=Rpd3,HDAC4
chr2L	3573117	3574549	mE1_HDAC_PRE_00159	0	+	FBsf0000343337	bound_moiety=Rpd3,HDAC4
chr2L	3605944	3606697	mE1_HDAC_PRE_00160	0	+	FBsf0000343338	bound_moiety=Rpd3,HDAC4

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Silencers (R5) (silencers) Track Description


	Description This track shows the locations of the putative Polycomb Response Elements (PRE). PRE regions are defined as genomic locations that show enrichment of either Rpd3 (HDAC1) or HDAC4 in conjunction with H3K27me3 but not H3K4me3. Credits Thanks to FlyBase for providing these annotations. References Nègre N, et al. A cis-regulatory map of the Drosophila genome. Nature. 2011 Mar 24;471(7339):527-31.