Schema for Silencers (R5) - Putative Polycomb Response Elements (Silencers) (R5)
|
|
Database: dm6 Primary Table: silencers Row Count: 537
field | example | SQL type | info |
chrom | chr2L | varchar(255) | values |
chromStart | 377455 | int(10) unsigned | range |
chromEnd | 377891 | int(10) unsigned | range |
name | mE1_HDAC_PRE_00146 | varchar(255) | values |
score | 0 | int(10) unsigned | range |
strand | + | char(1) | values |
id | FBsf0000343329 | varchar(255) | values |
description | bound_moiety=Rpd3,HDAC4 | longblob | |
|
| |
|
|
Sample Rows
|
|
chrom | chromStart | chromEnd | name | score | strand | id | description |
---|
chr2L | 377455 | 377891 | mE1_HDAC_PRE_00146 | 0 | + | FBsf0000343329 | bound_moiety=Rpd3,HDAC4 |
chr2L | 519840 | 520317 | mE1_HDAC_PRE_00147 | 0 | + | FBsf0000343330 | bound_moiety=Rpd3,HDAC4 |
chr2L | 576564 | 577502 | mE1_HDAC_PRE_00151 | 0 | + | FBsf0000343331 | bound_moiety=Rpd3,HDAC4 |
chr2L | 594302 | 595005 | mE1_HDAC_PRE_00153 | 0 | + | FBsf0000343332 | bound_moiety=Rpd3,HDAC4 |
chr2L | 597247 | 598180 | mE1_HDAC_PRE_00154 | 0 | + | FBsf0000343333 | bound_moiety=Rpd3,HDAC4 |
chr2L | 1430246 | 1430558 | mE1_HDAC_PRE_00155 | 0 | + | FBsf0000343334 | bound_moiety=Rpd3,HDAC4 |
chr2L | 2451221 | 2451777 | mE1_HDAC_PRE_00156 | 0 | + | FBsf0000343335 | bound_moiety=Rpd3,HDAC4 |
chr2L | 3538116 | 3538623 | mE1_HDAC_PRE_00157 | 0 | + | FBsf0000343336 | bound_moiety=Rpd3,HDAC4 |
chr2L | 3573117 | 3574549 | mE1_HDAC_PRE_00159 | 0 | + | FBsf0000343337 | bound_moiety=Rpd3,HDAC4 |
chr2L | 3605944 | 3606697 | mE1_HDAC_PRE_00160 | 0 | + | FBsf0000343338 | bound_moiety=Rpd3,HDAC4 |
|
Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
| |
|
|
Silencers (R5) (silencers) Track Description
|
|
Description
This track shows the locations of the putative Polycomb Response Elements (PRE). PRE regions are
defined as genomic locations that show enrichment of either Rpd3 (HDAC1) or HDAC4 in conjunction
with H3K27me3 but not H3K4me3.
Credits
Thanks to FlyBase for providing these annotations.
References
Nègre N, et al.
A cis-regulatory map of the Drosophila genome.
Nature. 2011 Mar 24;471(7339):527-31.
| |
|
|
|