Schema for Silencers (R5) - Putative Polycomb Response Elements (Silencers) (R5)
  Database: dm6    Primary Table: silencers    Row Count: 537
fieldexampleSQL type info
chrom chr2Lvarchar(255) values
chromStart 377455int(10) unsigned range
chromEnd 377891int(10) unsigned range
name mE1_HDAC_PRE_00146varchar(255) values
score 0int(10) unsigned range
strand +char(1) values
id FBsf0000343329varchar(255) values
description bound_moiety=Rpd3,HDAC4longblob  

Sample Rows
 
chromchromStartchromEndnamescorestrandiddescription
chr2L377455377891mE1_HDAC_PRE_001460+FBsf0000343329bound_moiety=Rpd3,HDAC4
chr2L519840520317mE1_HDAC_PRE_001470+FBsf0000343330bound_moiety=Rpd3,HDAC4
chr2L576564577502mE1_HDAC_PRE_001510+FBsf0000343331bound_moiety=Rpd3,HDAC4
chr2L594302595005mE1_HDAC_PRE_001530+FBsf0000343332bound_moiety=Rpd3,HDAC4
chr2L597247598180mE1_HDAC_PRE_001540+FBsf0000343333bound_moiety=Rpd3,HDAC4
chr2L14302461430558mE1_HDAC_PRE_001550+FBsf0000343334bound_moiety=Rpd3,HDAC4
chr2L24512212451777mE1_HDAC_PRE_001560+FBsf0000343335bound_moiety=Rpd3,HDAC4
chr2L35381163538623mE1_HDAC_PRE_001570+FBsf0000343336bound_moiety=Rpd3,HDAC4
chr2L35731173574549mE1_HDAC_PRE_001590+FBsf0000343337bound_moiety=Rpd3,HDAC4
chr2L36059443606697mE1_HDAC_PRE_001600+FBsf0000343338bound_moiety=Rpd3,HDAC4

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Silencers (R5) (silencers) Track Description
 

Description

This track shows the locations of the putative Polycomb Response Elements (PRE). PRE regions are defined as genomic locations that show enrichment of either Rpd3 (HDAC1) or HDAC4 in conjunction with H3K27me3 but not H3K4me3.

Credits

Thanks to FlyBase for providing these annotations.

References

Nègre N, et al. A cis-regulatory map of the Drosophila genome. Nature. 2011 Mar 24;471(7339):527-31.