Schema for SNS Origins of Replication (R5) - Origins of Replication Detected by SNS (R5)

Database: dm6 Primary Table: GSE65692_BG3_origins Row Count: 8,156 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	0	`int(10) unsigned`	range
`chromEnd`	5270	`int(10) unsigned`	range
`efficiency`	5300.18	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	efficiency
585	chr2L	0	5270	5300.18
585	chr2L	20571	20981	1502.18
585	chr2L	64242	64801	1441.32
585	chr2L	69645	70223	2463.59
585	chr2L	73547	73802	2367.22
585	chr2L	102588	102939	2241.21
585	chr2L	109220	109436	2449.68
585	chr2L	128523	129161	2153.45
586	chr2L	132980	133378	1948.18
586	chr2L	160667	161233	1809.89

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

SNS Origins of Replication (R5) (sns_origins) Track Description


	Description These tracks show the locations of potential origins of replications based on the results of Short Nascent Strand Sequencing (SNS-Seq). Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE65692. The results were lifted from the D. melanogaster release 5 assembly to the release 6 assembly. Comoglio F, Schlumpf T, Schmid V, Rohs R, Beisel C, Paro R. High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan origins. Cell Rep. 2015 May 5;11(5):821-34.

Description