Schema for SNS Origins of Replication (R5) - Origins of Replication Detected by SNS (R5)

Database: dm6 Primary Table: GSE65692_S2_origins Row Count: 7,244 Data last updated: 2022-10-20

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	12854	`int(10) unsigned`	range
`chromEnd`	13321	`int(10) unsigned`	range
`efficiency`	1719.49	`float`	range

Sample Rows

bin	chrom	chromStart	chromEnd	efficiency
585	chr2L	12854	13321	1719.49
585	chr2L	47504	48927	1080.82
585	chr2L	69714	70202	1946.72
585	chr2L	72641	73125	2241.74
585	chr2L	84712	84954	1566.12
585	chr2L	86774	87188	1328.5
585	chr2L	102683	103032	1243.55
585	chr2L	112788	113265	1515.72
585	chr2L	127167	127556	1321.34
585	chr2L	127577	127904	1614.68

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

SNS Origins of Replication (R5) (sns_origins) Track Description


	Description These tracks show the locations of potential origins of replications based on the results of Short Nascent Strand Sequencing (SNS-Seq). Credits The datasets were retrieved from the Gene Expression Omnibus database at NCBI under the accession number GSE65692. The results were lifted from the D. melanogaster release 5 assembly to the release 6 assembly. Comoglio F, Schlumpf T, Schmid V, Rohs R, Beisel C, Paro R. High-resolution profiling of Drosophila replication start sites reveals a DNA shape and chromatin signature of metazoan origins. Cell Rep. 2015 May 5;11(5):821-34.

Description