Schema for Start-Seq TSS (Larvae) (R5) - Transcription Start Sites Identified by Start-Seq (Larvae) (R5)
  Database: dm6    Primary Table: GSE96922_nuTSS_calls Data last updated: 2018-03-13
Big Bed File: /gbdb/dm6/bbi/startseq/GSE96922_nuTSS_calls_r6.bb
Item Count: 17,294
Format description: Novel Unannotated TSS (nuTSS)
fieldexampledescription
chromchr2LReference sequence chromosome or scaffold
chromStart15737664Start position in chromosome
chromEnd15737665End position in chromosome
namenuTSS_0001093Name of item
score0Score from 0-1000
strand++ or -
HWT_counts6.03HWT counts
K36R_counts15.78H3K36R counts
HWT_counts_508.77HWT counts 50
K36R_counts_5030.32H3K36R counts 50
geneFBgn0010382Gene
obsTSSfb557_02312obsTSS
Dist_from_gene0Distance from gene
Dist_from_TSS8946Distance from Transcription Start Site (TSS)
Dist_from_TES9880Distance from Transcription End Site (TES)
RegionExonicRegion
DirectionAntisenseDirection

Sample Rows
 
chromchromStartchromEndnamescorestrandHWT_countsK36R_countsHWT_counts_50K36R_counts_50geneobsTSSDist_from_geneDist_from_TSSDist_from_TESRegionDirection
chr2L1573766415737665nuTSS_00010930+6.0315.788.7730.32FBgn0010382fb557_02312089469880ExonicAntisense
chr2L1574336915743370nuTSS_00096760-66.9588.34110.19123.93FBgn0010382fb557_023120324115585IntronicSense
chr2L1574392315743924nuTSS_00010940+2.3622.492.3630.45FBgn0010382fb557_023120268716139IntronicAntisense
chr2L1574977115749772nuTSS_00096770-4.861.429.421.87FBgn0001989fb557_0231701307170ExonicSense
chr2L1575899515758996nuTSS_00096780-41.4745.1280.2968.26FBgn0001987fb557_02320034132993ExonicSense
chr2L1575965115759652nuTSS_00096790-11.384.9933.9125.55FBgn0001987fb557_02320027573649ExonicSense
chr2L1576088915760890nuTSS_00010950+28.1828.1928.1830.57FBgn0001987fb557_02320015194887IntronicAntisense
chr2L1577038315770384nuTSS_00096800-9.04018.2210.99FBgn0041627fb557_0232607761753IntronicSense
chr2L1577545015775451nuTSS_00096810-23.9712.4823.9712.48FBgn0264260fb557_023299921402992IntergenicSense
chr2L1579965615799657nuTSS_00096820-18.5115.4919.2515.49FBgn0265813fb557_023317525106637525IntergenicSense

Start-Seq TSS (Larvae) (R5) (startseq_tss) Track Description
 

Description

These tracks show the observed (annotated) transcription start sites (obsTSS) and novel unannotated transcription start sites (nuTSS) that were identified by Start-Seq in D. melanogaster 3rd instar larvae. The datasets were obtained from the Gene Expression Omnibus database at NCBI under the accession number GSE96922. The analysis results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly.

References

Meers MP, Henriques T, Lavender CA, McKay DJ, Strahl BD, Duronio RJ, Adelman K, Matera AG. Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity. Elife. 2017 Mar 27;6.