Schema for Start-Seq TSS (Larvae) (R5) - Transcription Start Sites Identified by Start-Seq (Larvae) (R5)

Database: dm6 Primary Table: GSE96922_obsTSS_calls Data last updated: 2018-03-13
Big Bed File: /gbdb/dm6/bbi/startseq/GSE96922_obsTSS_calls_r6.bb
Item Count: 16,314
Format description: Observed (Annotated) TSS (obsTSS)

field	example	description
`chrom`	chr2L	Reference sequence chromosome or scaffold
`chromStart`	15676101	Start position in chromosome
`chromEnd`	15676102	End position in chromosome
`name`	fb557_02307	Name of item
`score`	0	Score from 0-1000
`strand`	-	+ or -
`HWT_counts`	0	HWT counts
`K36R_counts`	0	H3K36R counts
`HWT_counts_50`	0	HWT counts 50
`K36R_counts_50`	0	H3K36R counts 50
`transcript`	FBtr0333240	Transcript
`gene`	FBgn0264544	Gene
`genesymbol`	CG43923-RA	Gene symbol
`featuretype`	mRNA	Feature type
`genelength`	521	Gene length
`HWT_genecounts`	0	HWT gene counts
`K36R_genecounts`	0	H3K36R gene counts
`HWT_genecounts_kb`	0	HWT gene counts kb
`K36R_genecounts_kb`	0	H3K36R gene counts kb
`log2FC`	NA	log2 fold-change
`padj`	NA	Adjusted p-value

Sample Rows

chrom	chromStart	chromEnd	name	strand	HWT_counts	K36R_counts	HWT_counts_50	K36R_counts_50	transcript	gene	genesymbol	featuretype	genelength	HWT_genecounts	K36R_genecounts	HWT_genecounts_kb	K36R_genecounts_kb	log2FC	padj
chr2L	15676101	15676102	fb557_02307	-	0	0	0	0	FBtr0333240	FBgn0264544	CG43923-RA	mRNA	521	0	0	0	0	NA	NA
chr2L	15694470	15694471	fb557_02308	-	0	0	0	0	FBtr0335467	FBgn0264989	CG44140-RA	mRNA	434	0	0	0	0	NA	NA
chr2L	15696037	15696038	fb557_19030	+	0	0	0	0	FBtr0080758	FBgn0051780	CG31780-RB	mRNA	1483	0	0	0	0	NA	NA
chr2L	15705170	15705171	fb557_19031	+	0	0	0	0	FBtr0080759	FBgn0051827	CG31827-RA	mRNA	950	0	0	0	0	NA	NA
chr2L	15711098	15711099	fb557_02309	-	0	0	0	0	FBtr0333239	FBgn0264545	CG43924-RA	mRNA	521	0	0	0	0	NA	NA
chr2L	15718271	15718272	fb557_02305	-	0	0	0	0	FBtr0344773	FBgn0028863	CG4587-RH	mRNA	9362	127.9469008	107.4908873	13.66662046	11.48161582	-0.2555614	0.023563349
chr2L	15746256	15746257	fb557_19032	+	0	0	0	0.512894	FBtr0344038	FBgn0266309	CR44974-RA	ncRNA	686	1.317976477	1.182187539	1.921248509	1.72330545	-0.129063003	0.885363834
chr2L	15748000	15748001	fb557_19033	+	0	0	0	0	FBtr0343720	FBgn0266160	CR44866-RA	ncRNA	324	0.317441803	0.148509156	0.979758651	0.458361591	-0.297629717	NA
chr2L	15748114	15748115	fb557_02312	-	228.536	251.745	964.431	1280.05	FBtr0080773	FBgn0010382	CycE-RE	mRNA	5019	461.1458654	419.5784935	91.88002898	83.5980262	-0.136802002	0.003090911
chr2L	15751070	15751071	fb557_02317	-	1476.14	1093.55	6320.64	4109.74	FBtr0080771	FBgn0001989	l(2)35Di-RA	mRNA	980	235.2785232	414.9347325	240.0801257	423.4027882	0.81773227	1.01895E-44

Start-Seq TSS (Larvae) (R5) (startseq_tss) Track Description


	Description These tracks show the observed (annotated) transcription start sites (obsTSS) and novel unannotated transcription start sites (nuTSS) that were identified by Start-Seq in D. melanogaster 3rd instar larvae. The datasets were obtained from the Gene Expression Omnibus database at NCBI under the accession number GSE96922. The analysis results were lifted from the D. melanogaster Release 5 assembly over to the Release 6 assembly. References Meers MP, Henriques T, Lavender CA, McKay DJ, Strahl BD, Duronio RJ, Adelman K, Matera AG. Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity. Elife. 2017 Mar 27;6.

Description

References