Schema for TSS (Embryonic) (R5) - Transcription Start Sites (Embryonic) (R5)

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Schema for TSS (Embryonic) (R5) - Transcription Start Sites (Embryonic) (R5)

Database: dm6 Primary Table: tss_embryonic Row Count: 10,983

field	example	SQL type	info
`bin`	585	`smallint(5) unsigned`	range
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	58104	`int(10) unsigned`	range
`chromEnd`	58156	`int(10) unsigned`	range
`name`	FBsf0000415595	`varchar(255)`	values
`score`	24	`int(10) unsigned`	range
`strand`	-	`char(1)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	name	score	strand
585	chr2L	58104	58156	FBsf0000415595	24	-
585	chr2L	59226	59310	FBsf0000415596	664	-
585	chr2L	66986	67163	FBsf0000415597	318	+
585	chr2L	67331	67558	FBsf0000415598	336	+
585	chr2L	67638	67714	FBsf0000415599	40	+
585	chr2L	72323	72605	FBsf0000415600	168	+
585	chr2L	87155	87410	FBsf0000415601	163	-
585	chr2L	94729	95029	FBsf0000415602	103	+
585	chr2L	102355	102523	FBsf0000415603	1383	+
585	chr2L	106623	106762	FBsf0000415604	1387	-

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

TSS (Embryonic) (R5) (tss_embryonic) Track Description


	Description This track shows the transcription start sites (TSS) in D. melanogaster mixed embryos that have been identified by the modENCODE Drosophila Transcriptome group. Locations included in this list were determined experimentally using ESTs, CAGE, or RLM-RACE. Credits This dataset is available from FlyBase under the accession number FBlc0000202. Hoskins RA. et al. Genome-wide analysis of promoter architecture in Drosophila melanogaster. Genome Res. 2011 Feb;21(2):182-92.