Schema for Natural TE - Transposable Elements Annotated by FlyBase

Database: dm6 Primary Table: transposon_DINE Row Count: 2,235

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	9887	`int(10) unsigned`	range
`chromEnd`	9949	`int(10) unsigned`	range
`name`	INE-1{}1749	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`id`	FBti0059810	`varchar(255)`	values
`description`	INE-1{}1749	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	id	description
chr2L	9887	9949	INE-1{}1749	1000	-	FBti0059810	INE-1{}1749
chr2L	24235	24462	INE-1{}1751	1000	+	FBti0059812	INE-1{}1751
chr2L	27529	27788	INE-1{}1753	1000	-	FBti0059814	INE-1{}1753
chr2L	60239	60580	INE-1{}1755	1000	+	FBti0059816	INE-1{}1755
chr2L	60662	60773	INE-1{}1757	1000	+	FBti0059818	INE-1{}1757
chr2L	65663	65698	INE-1{}1758	1000	-	FBti0059819	INE-1{}1758
chr2L	116517	116976	INE-1{}2496	1000	+	FBti0060557	INE-1{}2496
chr2L	172691	172724	INE-1{}2497	1000	+	FBti0060558	INE-1{}2497
chr2L	173742	173778	INE-1{}2498	1000	-	FBti0060559	INE-1{}2498
chr2L	178278	178467	INE-1{}2499	1000	+	FBti0060560	INE-1{}2499

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Natural TE (transposable_elements) Track Description

Description

This track shows the locations of the natural transposable elements that have been annotated by FlyBase in release 6.01. The color of each element corresponds to its repeat class:

Repeat Class	Description	Color
TIR	Terminal Inverted Repeats (DNA Transposons)
LINE	Long Interspersed Nuclear Elements (Retrotransposons)
LTR	Long Terminal Repeats (Retrotransposons)
DINE	Drosophila Interspersed Nuclear Elements
Foldback	Foldback Elements
Unclassified	Unclassified Elements

Credits

Transposable elements annotations were extracted from the GFF annotation files provided by FlyBase.