Schema for Natural TE - Transposable Elements Annotated by FlyBase

Database: dm6 Primary Table: transposon_FB Row Count: 60

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	4181239	`int(10) unsigned`	range
`chromEnd`	4181288	`int(10) unsigned`	range
`name`	FB{}4985	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	+	`char(1)`	values
`id`	FBti0063046	`varchar(255)`	values
`description`	FB{}4985	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	id	description
chr2L	4181239	4181288	FB{}4985	1000	+	FBti0063046	FB{}4985
chr2L	13363407	13363455	FB{}2287	1000	+	FBti0060348	FB{}2287
chr2L	21020332	21023947	FB{}480	1000	+	FBti0019826	FB{}480
chr2L	21208595	21208773	FB{}2221	1000	+	FBti0060282	FB{}2221
chr2L	21334175	21334486	FB{}4187	1000	-	FBti0062248	FB{}4187
chr2L	21393497	21393617	FB{}4188	1000	+	FBti0062249	FB{}4188
chr2L	21575750	21575817	FB{}4833	1000	+	FBti0062894	FB{}4833
chr2L	21619640	21619687	FB{}4834	1000	+	FBti0062895	FB{}4834
chr2L	21644993	21645053	FB{}4835	1000	+	FBti0062896	FB{}4835
chr2L	21706717	21707775	FB{}nolo[FB]	1000	+	FBti0019846	FB{}nolo[FB]

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Natural TE (transposable_elements) Track Description

Description

This track shows the locations of the natural transposable elements that have been annotated by FlyBase in release 6.01. The color of each element corresponds to its repeat class:

Repeat Class	Description	Color
TIR	Terminal Inverted Repeats (DNA Transposons)
LINE	Long Interspersed Nuclear Elements (Retrotransposons)
LTR	Long Terminal Repeats (Retrotransposons)
DINE	Drosophila Interspersed Nuclear Elements
Foldback	Foldback Elements
Unclassified	Unclassified Elements

Credits

Transposable elements annotations were extracted from the GFF annotation files provided by FlyBase.