Schema for Natural TE - Transposable Elements Annotated by FlyBase

Database: dm6 Primary Table: transposon_TIR Row Count: 749

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	770515	`int(10) unsigned`	range
`chromEnd`	772243	`int(10) unsigned`	range
`name`	Bari1{}282	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`id`	FBti0019099	`varchar(255)`	values
`description`	Bari1{}282	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	id	description
chr2L	770515	772243	Bari1{}282	1000	-	FBti0019099	Bari1{}282
chr2L	2713413	2713444	transib2{}2657	1000	-	FBti0060718	transib2{}2657
chr2L	2933353	2935475	pogo{}297	1000	-	FBti0019112	pogo{}297
chr2L	3171380	3171417	1360{}4961	1000	-	FBti0063022	1360{}4961
chr2L	3388652	3388838	pogo{}301	1000	+	FBti0019116	pogo{}301
chr2L	4953565	4953751	pogo{}308	1000	+	FBti0019123	pogo{}308
chr2L	5804279	5804315	1360{}5611	1000	-	FBti0063672	1360{}5611
chr2L	6101130	6101639	S{}312	1000	+	FBti0019127	S{}312
chr2L	7959094	7960450	pogo{}322	1000	+	FBti0019134	pogo{}322
chr2L	10118444	10118565	H{}6189	1000	-	FBti0064250	H{}6189

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Natural TE (transposable_elements) Track Description

Description

This track shows the locations of the natural transposable elements that have been annotated by FlyBase in release 6.01. The color of each element corresponds to its repeat class:

Repeat Class	Description	Color
TIR	Terminal Inverted Repeats (DNA Transposons)
LINE	Long Interspersed Nuclear Elements (Retrotransposons)
LTR	Long Terminal Repeats (Retrotransposons)
DINE	Drosophila Interspersed Nuclear Elements
Foldback	Foldback Elements
Unclassified	Unclassified Elements

Credits

Transposable elements annotations were extracted from the GFF annotation files provided by FlyBase.