Schema for Natural TE - Transposable Elements Annotated by FlyBase

Database: dm6 Primary Table: transposon_Unknown Row Count: 11

field	example	SQL type	info
`chrom`	chr2L	`varchar(255)`	values
`chromStart`	22201407	`int(10) unsigned`	range
`chromEnd`	22206551	`int(10) unsigned`	range
`name`	RR51475	`varchar(255)`	values
`score`	1000	`int(10) unsigned`	range
`strand`	-	`char(1)`	values
`id`	RR51475_transposable_element	`varchar(255)`	values
`description`	RR51475	`longblob`

Sample Rows

chrom	chromStart	chromEnd	name	score	strand	id	description
chr2L	22201407	22206551	RR51475	1000	-	RR51475_transposable_element	RR51475
chr2R	4300194	4307546	RR50204	1000	-	RR50204_transposable_element	RR50204
chr2R	4313783	4321129	RR50207	1000	-	RR50207_transposable_element	RR50207
chr2R	4330794	4335500	RR49755	1000	+	RR49755_transposable_element	RR49755
chr3L	23824848	23832233	RR51000	1000	-	RR51000_transposable_element	RR51000
chr3L	23832255	23839630	RR51001	1000	-	RR51001_transposable_element	RR51001
chr3L	23942543	23947792	RR51093	1000	-	RR51093_transposable_element	RR51093
chr3L	24098287	24102904	RR51048	1000	-	RR51048_transposable_element	RR51048
chr3L	24242516	24247661	RR51007	1000	-	RR51007_transposable_element	RR51007
chr3L	24388107	24393239	RR50960	1000	-	RR50960_transposable_element	RR50960

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Natural TE (transposable_elements) Track Description

Description

This track shows the locations of the natural transposable elements that have been annotated by FlyBase in release 6.01. The color of each element corresponds to its repeat class:

Repeat Class	Description	Color
TIR	Terminal Inverted Repeats (DNA Transposons)
LINE	Long Interspersed Nuclear Elements (Retrotransposons)
LTR	Long Terminal Repeats (Retrotransposons)
DINE	Drosophila Interspersed Nuclear Elements
Foldback	Foldback Elements
Unclassified	Unclassified Elements

Credits

Transposable elements annotations were extracted from the GFF annotation files provided by FlyBase.